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gnu: multiqc: Update to 0.9.

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Suggested by Raoul Bonnal <ilpuccio.febo@gmail.com>.

* gnu/packages/bioinformatics.scm (multiqc): Update to 0.9.
[origin]: Add patch.
* gnu/packages/patches/multiqc-fix-git-subprocess-error.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
This commit is contained in:
Ben Woodcroft 2016-12-30 17:21:37 +10:00
parent 95d7d0c57f
commit a29929b32c
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3 changed files with 24 additions and 2 deletions
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16
gnu/packages/patches/multiqc-fix-git-subprocess-error.patch Normal file
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@ -0,0 +1,16 @@
Without this patch, the incorrect exception is caught when 'git' is not in
PATH. See https://github.com/ewels/MultiQC/pull/377.
diff --git a/multiqc/utils/config.py b/multiqc/utils/config.py
index 01fa554..4a11793 100755
--- a/multiqc/utils/config.py
+++ b/multiqc/utils/config.py
@@ -28,7 +28,7 @@ try:
git_hash = subprocess.check_output(['git', 'rev-parse', 'HEAD'], stderr=subprocess.STDOUT)
git_hash_short = git_hash[:7]
version = '{} ({})'.format(version, git_hash_short)
-except subprocess.CalledProcessError:
+except (subprocess.CalledProcessError, FileNotFoundError):
pass
os.chdir(cwd)