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gnu: python-taggd: Update to 0.4.0.
* gnu/packages/bioinformatics.scm (python-taggd): Update to 0.4.0. [origin, homepage]: Change to "https://github.com/jfnavarro/taggd" [source]: Remove out-dated snippet. [arguments] <test-flags>: Reenable fixed test. [propagated-inputs]: Add python-tqdm, python-aiofiles, python-dnaio, python-types-aiofiles, and python-types-tqdm. Change-Id: I8c1c445bdf1b463b9ffd16602001608a3c9d4fcd Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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1 changed files with 11 additions and 12 deletions
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@ -12165,26 +12165,19 @@ interpretation.")
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(define-public python-taggd
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(package
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(name "python-taggd")
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(version "0.3.6")
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(version "0.4.0")
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/SpatialTranscriptomicsResearch/taggd")
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(url "https://github.com/jfnavarro/taggd")
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(commit version)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0j19ah81z7aqrdljah9hyarp91gvgbk63pz6fz3pdpksy1yqyi6k"))
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(modules '((guix build utils)))
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(snippet
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'(for-each delete-file
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(find-files "taggd" "\\.c$")))))
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"17hi1vs1qwhxx8jnradnl9k471li6fjb6w5sljkpzjxy7rkxwb85"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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#:test-flags
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;; AssertionError: 0 is not true : Running Normal BAM test failed.
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#~(list "-k" "not test_normal_bam_run")
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#:phases
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#~(modify-phases %standard-phases
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(add-before 'check 'remove-local-taggd
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@ -12193,10 +12186,16 @@ interpretation.")
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;; taggd when running tests.
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(delete-file-recursively "taggd"))))))
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(propagated-inputs
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(list python-numpy python-pysam))
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(list python-numpy
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python-pysam
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python-tqdm
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python-aiofiles
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python-dnaio
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python-types-aiofiles
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python-types-tqdm))
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(native-inputs
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(list python-cython python-pytest python-setuptools))
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(home-page "https://github.com/SpatialTranscriptomicsResearch/taggd")
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(home-page "https://github.com/jfnavarro/taggd")
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(synopsis "Genetic barcode demultiplexing")
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(description "This package provides TagGD barcode demultiplexing utilities
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for Spatial Transcriptomics data.")
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