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gnu: Add r-biomformat.
* gnu/packages/bioconductor.scm (r-biomformat): New variable.
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@ -14118,6 +14118,38 @@ the development of new database connectors for local projects or inside
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separate published packages.")
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separate published packages.")
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(license license:agpl3+)))
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(license license:agpl3+)))
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(define-public r-biomformat
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(package
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(name "r-biomformat")
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(version "1.20.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "biomformat" version))
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(sha256
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(base32
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"1wgshkddxbmpsihpkm0dp7vqp59ns6iqbx574y80n2pxb8dx8sy9"))))
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(properties `((upstream-name . "biomformat")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-jsonlite" ,r-jsonlite)
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("r-matrix" ,r-matrix)
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("r-plyr" ,r-plyr)
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("r-rhdf5" ,r-rhdf5)))
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(native-inputs `(("r-knitr" ,r-knitr)))
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(home-page "https://github.com/joey711/biomformat/")
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(synopsis "Interface package for the BIOM file format")
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(description
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"This is an R package for interfacing with the BIOM format. This package
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includes basic tools for reading biom-format files, accessing and subsetting
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data tables from a biom object (which is more complex than a single table), as
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well as limited support for writing a biom-object back to a biom-format file.
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The design of this API is intended to match the Python API and other tools
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included with the biom-format project, but with a decidedly \"R flavor\" that
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should be familiar to R users. This includes S4 classes and methods, as well
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as extensions of common core functions/methods.")
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(license license:gpl2)))
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(define-public r-tximeta
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(define-public r-tximeta
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(package
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(package
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(name "r-tximeta")
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(name "r-tximeta")
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