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Merge branch 'master' into core-updates-frozen

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Conflicts:
	gnu/packages/bioinformatics.scm
	gnu/packages/cmake.scm
	gnu/packages/curl.scm
	gnu/packages/emacs-xyz.scm
	gnu/packages/gpodder.scm
	gnu/packages/music.scm
	gnu/packages/patches/glibc-bootstrap-system.patch
	gnu/packages/python-xyz.scm
	gnu/packages/shells.scm
	gnu/packages/statistics.scm
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Marius Bakke 2021-07-29 22:34:57 +02:00
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@ -1189,6 +1189,57 @@ Models, is a program for performing both single-SNP and SNP-set genome-wide
association studies (GWAS) on extremely large data sets.")
(license license:asl2.0)))
(define-public python-hyperopt
(package
(name "python-hyperopt")
(version "0.2.5")
(source
(origin
(method url-fetch)
(uri (pypi-uri "hyperopt" version))
(sha256
(base32 "1k4ma8ci0bxghw7g4ms944zak1pi83yv2d6bxd7fcslm1zalfq5w"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(replace 'check
(lambda* (#:key inputs outputs tests? #:allow-other-keys)
(when tests?
(add-installed-pythonpath inputs outputs)
(invoke "python" "-m" "pytest" "--ignore"
;; Needs python-pyspark.
"hyperopt/tests/test_spark.py"
;; Needs both python-scikit-learn and python-lightgbm.
"--ignore" "hyperopt/tests/test_atpe_basic.py"
;; The tests below need python-lightgbm.
"-k" (string-append "not test_branin"
" and not test_distractor"
" and not test_q1lognormal"
" and not test_quadratic1"
" and not test_twoarms"))))))))
(propagated-inputs
`(("python-cloudpickle" ,python-cloudpickle)
("python-future" ,python-future)
("python-networkx" ,python-networkx)
("python-numpy" ,python-numpy)
("python-scipy" ,python-scipy)
("python-six" ,python-six)
("python-tqdm" ,python-tqdm)))
(native-inputs
`(("python-black" ,python-black)
("python-ipython" ,python-ipython)
("python-ipyparallel" ,python-ipyparallel)
("python-nose" ,python-nose)
("python-pymongo" ,python-pymongo)
("python-pytest" ,python-pytest)))
(home-page "https://hyperopt.github.io/hyperopt/")
(synopsis "Library for hyperparameter optimization")
(description "Hyperopt is a Python library for serial and parallel
optimization over awkward search spaces, which may include real-valued,
discrete, and conditional dimensions.")
(license license:bsd-3)))
;; There have been no proper releases yet.
(define-public kaldi
(let ((commit "d4791c0f3fc1a09c042dac365e120899ee2ad21e")