amaharaneko/guix-mirrors
1
1
Fork 0
mirror of https://codeberg.org/guix/guix.git synced 2025-10-02 02:15:12 +00:00
Code Issues Projects Releases Packages Wiki Activity Actions

Merge branch 'master' into core-updates-frozen

Browse source 
Conflicts:
	gnu/packages/bioinformatics.scm
	gnu/packages/cmake.scm
	gnu/packages/curl.scm
	gnu/packages/emacs-xyz.scm
	gnu/packages/gpodder.scm
	gnu/packages/music.scm
	gnu/packages/patches/glibc-bootstrap-system.patch
	gnu/packages/python-xyz.scm
	gnu/packages/shells.scm
	gnu/packages/statistics.scm
This commit is contained in:
Marius Bakke 2021-07-29 22:34:57 +02:00
commit b029be2ee0
No known key found for this signature in database
GPG key ID: A2A06DF2A33A54FA
100 changed files with 5664 additions and 43929 deletions
Download patch file Download diff file Expand all files Collapse all files

218
gnu/packages/python-xyz.scm
View file

@ -66,7 +66,7 @@
;;; Copyright © 2019 Jacob MacDonald <jaccarmac@gmail.com>
;;; Copyright © 2019, 2020 Giacomo Leidi <goodoldpaul@autistici.org>
;;; Copyright © 2019 Wiktor Żelazny <wzelazny@vurv.cz>
;;; Copyright © 2019, 2020 Tanguy Le Carrour <tanguy@bioneland.org>
;;; Copyright © 2019, 2020, 2021 Tanguy Le Carrour <tanguy@bioneland.org>
;;; Copyright © 2019, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
;;; Copyright © 2020 Riku Viitanen <riku.viitanen@protonmail.com>
;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net>
@ -105,6 +105,7 @@
;;; Copyright © 2021 Danial Behzadi <dani.behzi@ubuntu.com>
;;; Copyright © 2021 Maxime Devos <maximedevos@telenet.be>
;;; Copyright © 2021 Hugo Lecomte <hugo.lecomte@inria.fr>
;;; Copyright © 2021 Franck Pérignon <franck.perignon@univ-grenoble-alpes.fr>
;;;
;;; This file is part of GNU Guix.
;;;
@ -5534,14 +5535,14 @@ that client code uses to construct the grammar directly in Python code.")
(define-public python-numexpr
(package
(name "python-numexpr")
(version "2.6.5")
(version "2.7.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "numexpr" version))
(sha256
(base32
"1frnbcwmsi312154x274xl28xazr1k8vjby83fwyla2n10a81bgq"))))
"09d8yfsx33ddwfkpn8805w2mxnn4cvf47yc66g4azldpz4lnaqa3"))))
(build-system python-build-system)
(arguments `(#:tests? #f)) ; no tests included
(propagated-inputs
@ -6321,13 +6322,13 @@ the OleFileIO module from PIL, the Python Image Library.")
(define-public python-pikepdf
(package
(name "python-pikepdf")
(version "2.14.2")
(version "2.16.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pikepdf" version))
(sha256
(base32 "01f173af5j0fmrzg6czfr92d331bqdbs3dkch7p41ykyv4fsv6kn"))))
(base32 "1phdpi9cm2pbvgcxqvwr8ck327sxhdw4dnxmzhrbf7hzydmgykg2"))))
(build-system python-build-system)
(arguments
`(#:tests? #false)) ;require python-xmp-toolkit
@ -10350,6 +10351,26 @@ your package is installed, via @code{pkg_resources} (part of
primary use case is APIs defined before keyword-only parameters existed.")
(license license:gpl3+)))
(define-public python-langdetect
(package
(name "python-langdetect")
(version "1.0.9")
(source
(origin
(method url-fetch)
(uri (pypi-uri "langdetect" version))
(sha256
(base32 "1805svvb7xjm4sf1j7b6nc3409x37pd1xmabfwwjf1ldkzwgxhfb"))))
(build-system python-build-system)
(propagated-inputs
`(("python-six" ,python-six)))
(home-page "https://github.com/Mimino666/langdetect")
(synopsis "Language detection library")
(description
"This library is a port of Nakatani Shuyo's language-detection library
(version from 03/03/2014) to Python.")
(license license:expat)))
(define-public python-pyasn1
(package
(name "python-pyasn1")
@ -19391,6 +19412,50 @@ and works only with Python 2 and NumPy < 1.9.")
(define-public python2-phonenumbers
(package-with-python2 python-phonenumbers))
(define-public python-heapdict
(package
(name "python-heapdict")
(version "1.0.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "HeapDict" version))
(sha256
(base32
"1dnd7v9adqd21bf4ih2wzn9a7b41m0nccb0vbxny9n037rxzb5c4"))))
(build-system python-build-system)
(home-page "http://stutzbachenterprises.com/")
(synopsis "Heap with decrease-key and increase-key operations")
(description
"heapdict implements the MutableMapping ABC, meaning it works pretty much
like a regular Python @code{dict}. It’s designed to be used as a priority
queue.")
(license license:bsd-3)))
(define-public python-zict
(package
(name "python-zict")
(version "2.0.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "zict" version))
(sha256
(base32
"05pd1hyhqvpw87rnbvl3vdyf619snpyccbswaxisdj17frwnjacf"))))
(build-system python-build-system)
(propagated-inputs
`(("python-heapdict" ,python-heapdict)))
(native-inputs
`(("python-pytest" ,python-pytest)))
(home-page "https://zict.readthedocs.io/en/latest/")
(synopsis "Composable mutable mapping tools")
(description "This package provides abstract @code{MutableMapping} classes
that consume and build on other @code{MutableMappings}. Several of these can
be composed with one another to form intuitive interfaces over complex storage
systems policies.")
(license license:bsd-3)))
(define-public python-send2trash
(package
(name "python-send2trash")
@ -20726,6 +20791,43 @@ Public Suffix List's private domains as well.")
(define-public python2-tldextract
(package-with-python2 python-tldextract))
(define-public python-tldr
(package
(name "python-tldr")
(version "1.2.1")
(source
(origin
;; There's no test in PyPI.
(method git-fetch)
(uri (git-reference
(url "https://github.com/tldr-pages/tldr-python-client")
(commit version)))
(file-name (git-file-name name version))
(sha256
(base32 "0n9wqvjxspm18vlxf9j9slrcydshk4rkv5nwkrqhfq606n6zvks4"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
;; This test fails. It tries to open a network socket.
(invoke "pytest" "-vv" "-k" "not test_error_message")))))))
(native-inputs
`(("python-pytest" ,python-pytest)
("python-pytest-runner" ,python-pytest-runner)))
(inputs
`(("python-argcomplete" ,python-argcomplete)
("python-colorama" ,python-colorama)
("python-termcolor" ,python-termcolor)))
(home-page "https://github.com/tldr-pages/tldr-python-client")
(synopsis "Python command-line client for tldr pages")
(description "This package provides the @code{tldr} command allowing users
to view @code{tldr} pages from a shell. The @code{tldr} pages are a community
effort to simplify the man pages with practical examples.")
(license license:expat))) ; MIT license
(define-public python-nodeenv
(package
(name "python-nodeenv")
@ -21250,30 +21352,56 @@ pure-Python.")
(define-public python2-sortedcontainers
(package-with-python2 python-sortedcontainers))
(define-public python-cloudpickle
(define python-cloudpickle-testpkg
(package
(name "python-cloudpickle")
(version "1.3.0")
(name "python-cloudpickle-testpkg")
(version "1.6.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "cloudpickle" version))
;; Archive on pypi does not include test infrastructure.
(method git-fetch)
(uri (git-reference
(url "https://github.com/cloudpipe/cloudpickle")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"0lx7gy9clp427qwcm7b23zdsldpr03gy3vxxhyi8fpbhwz859brq"))))
"1584d21d4rcpryn8yfz0pjnjprk4zm367m0razdcz8cjbsh0dxp6"))))
(build-system python-build-system)
(arguments
'(#:phases (modify-phases %standard-phases
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(if tests?
(invoke "pytest" "-s" "-vv")
(format #t "test suite not run~%")))))))
'(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'chdir
(lambda _ (chdir "tests/cloudpickle_testpkg"))))))
(home-page "https://github.com/cloudpipe/cloudpickle")
(synopsis "Extended pickling support for Python objects")
(description
"Cloudpickle makes it possible to serialize Python constructs not
supported by the default pickle module from the Python standard library. It
is especially useful for cluster computing where Python expressions are
shipped over the network to execute on remote hosts, possibly close to the
data.")
(license license:bsd-3)))
(define-public python-cloudpickle
(package
(inherit python-cloudpickle-testpkg)
(name "python-cloudpickle")
(build-system python-build-system)
(arguments
'(#:phases
(modify-phases %standard-phases
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(if tests?
(invoke "pytest" "-s" "-vv")
(format #t "test suite not run~%")))))))
(native-inputs
`(;; For tests.
("python-cloudpickle-testpkg" ,python-cloudpickle-testpkg)
("python-psutil" ,python-psutil)
("python-pytest" ,python-pytest)
("python-tornado" ,python-tornado)))
("python-tornado" ,python-tornado-6)))
(home-page "https://github.com/cloudpipe/cloudpickle")
(synopsis "Extended pickling support for Python objects")
(description
@ -21288,9 +21416,20 @@ data.")
(define-public python2-cloudpickle
(let ((base (package-with-python2 (strip-python2-variant python-cloudpickle))))
(package/inherit base
(version "1.3.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "cloudpickle" version))
(sha256
(base32
"0lx7gy9clp427qwcm7b23zdsldpr03gy3vxxhyi8fpbhwz859brq"))))
(native-inputs
`(("python-mock" ,python2-mock)
,@(package-native-inputs base)))
`(;; For tests.
("python-mock" ,python2-mock)
("python-psutil" ,python2-psutil)
("python-pytest" ,python2-pytest)
("python-tornado" ,python2-tornado)))
(propagated-inputs
`(("python-futures" ,python2-futures)
,@(package-propagated-inputs base))))))
@ -21354,14 +21493,14 @@ This Python package wraps the Blosc library.")
(define-public python-partd
(package
(name "python-partd")
(version "0.3.9")
(version "1.2.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "partd" version))
(sha256
(base32
"0sz6rwlnl4fqq220pyz863cnv0gjdxl4m7lscl71ishl5z0xkmhz"))))
"1sy3vdfyyx3bc5590zb7gwpsmimqz8m992x9hsydq8nmhixqjrxa"))))
(build-system python-build-system)
(propagated-inputs
`(("python-blosc" ,python-blosc)
@ -21401,13 +21540,13 @@ decisions with any given backend.")
(define-public python-dask
(package
(name "python-dask")
(version "2.14.0")
(version "2021.7.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "dask" version))
(sha256
(base32 "031j0j26s0675v0isyps2dphm03330n7dy8ifdy70jgvf78d119q"))))
(base32 "131c1bp193d7wp4gx09j6wark1c322c8sqjy22i0jaafl5rqfbz7"))))
(build-system python-build-system)
(arguments
`(#:phases
@ -21418,14 +21557,7 @@ decisions with any given backend.")
(substitute* "dask/tests/test_threaded.py"
(("def test_interrupt\\(\\)" m)
(string-append "@pytest.mark.skip(reason=\"Disabled by Guix\")\n"
m)))
;; This one fails with a type error:
;; TypeError: Already tz-aware, use tz_convert to convert.
(substitute* "dask/dataframe/tests/test_shuffle.py"
(("def test_set_index_timestamp\\(\\)" m)
(string-append "@pytest.mark.skip(reason=\"Disabled by Guix\")\n"
m)))
#t))
m)))))
(replace 'check
(lambda _ (invoke "pytest" "-vv"))))))
(propagated-inputs
@ -25878,3 +26010,25 @@ result.")
"This packages provides a docutils-compatibility bridge to CommonMark,
enabling you to write CommonMark inside of Docutils & Sphinx projects.")
(license license:expat)))
(define-public python-pyhull
(package
(name "python-pyhull")
(version "2015.2.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pyhull" version))
(sha256
(base32
"091sph52c4yk1jlm5w8xidxpzbia9r7s42bnb23q4m4b56ihmzyj"))))
(build-system python-build-system)
(propagated-inputs
`(("python-numpy" ,python-numpy)))
(home-page "https://github.com/materialsvirtuallab/pyhull")
(synopsis "Python wrapper to Qhull")
(description
"This package provides a Python wrapper to @uref{http://www.qhull.org/,
Qhull} for the computation of the convex hull, Delaunay triangulation, and
Voronoi diagram.")
(license license:expat)))