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gnu: Add r-absseq.
* gnu/packages/bioconductor.scm (r-absseq): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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@ -1128,6 +1128,35 @@ raw data, processed data, graphics output and statistical results are organized
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into folders according to the analysis settings used.")
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into folders according to the analysis settings used.")
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(license license:gpl2+)))
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(license license:gpl2+)))
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(define-public r-absseq
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(package
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(name "r-absseq")
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(version "1.48.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "ABSSeq" version))
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(sha256
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(base32
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"0l2hh6qv4lhw1g1kciw2f3ssj3lw83hqxnkmxzmv7snik3k6i650"))))
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(properties `((upstream-name . "ABSSeq")))
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(build-system r-build-system)
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(propagated-inputs (list r-limma r-locfit))
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(home-page "https://bioconductor.org/packages/ABSSeq")
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(synopsis
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"RNA-Seq analysis based on modelling absolute expression differences")
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(description
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"This package implements a new RNA-Seq analysis method and integrates two
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modules: a basic model for pairwise comparison and a linear model for complex
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design. RNA-Seq quantifies gene expression with reads count, which usually
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consists of conditions (or treatments) and several replicates for each
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condition. This software infers differential expression directly by the
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counts difference between conditions. It assumes that the sum counts
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difference between conditions follow a negative binomial distribution. In
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addition, @code{ABSSeq} moderates the fold-changes by two steps: the
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expression level and gene-specific dispersion, that might facilitate the gene
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ranking by fold-change and visualization.")
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(license license:gpl3+)))
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(define-public r-aneufinderdata
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(define-public r-aneufinderdata
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(package
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(package
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(name "r-aneufinderdata")
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(name "r-aneufinderdata")
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