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gnu: python-vireosnp: Update to 0.5.9-0.e365463.

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* gnu/packages/bioinformatics.scm (python-vireosnp): Update to 0.5.9-0.e365463.
[source]: Switch to git-fetch.
[arguments]<#:phases>: Replace 'check phase.
[native-inputs]: Remove python-wheel.

Change-Id: I53fee681916b4c4a5ad483fdf589e8297864da7f
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
This commit is contained in:
Nicolas Graves 2025-09-24 22:11:21 +02:00 • committed by Sharlatan Hellseher
parent 3a98b3f41a
commit cae5f4fb3f
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GPG key ID: 76D727BFF62CD2B5
1 changed files with 32 additions and 17 deletions
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@ -25155,27 +25155,42 @@ interest.")
(license license:gpl3+))))
(define-public python-vireosnp
(package
(name "python-vireosnp")
(version "0.5.7")
(source
(origin
(method url-fetch)
(uri (pypi-uri "vireoSNP" version))
(sha256
(base32 "02ybhzivsxwnb1axlgbs63wni1j27xajnkl4jw1ps5vmsz2l4b0d"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-matplotlib python-numpy python-scipy))
(native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/huangyh09/vireoSNP")
(synopsis "Deconvolution based on SNP for multiplexed scRNA-seq data")
(description
"This package provides a deconvolution based on Single Nucleotide
(let ((commit "e3654633f7663732572c03c5dcf9fb00ec43b653")
(revision "0"))
(package
(name "python-vireosnp")
(version (git-version "0.5.9" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/huangyh09/vireoSNP")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "1wd4llm54fvc1pc4nqfdc43g637gfx1f4z4aznvdr3biy9jksqza"))))
(build-system pyproject-build-system)
(arguments
(list
#:phases
#~(modify-phases %standard-phases
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(if tests?
(with-directory-excursion "examples"
(invoke "bash" "demo.sh"))
(format #f "test suite not run.~%")))))))
(propagated-inputs (list python-matplotlib python-numpy python-scipy))
(native-inputs (list python-setuptools))
(home-page "https://github.com/huangyh09/vireoSNP")
(synopsis "Deconvolution based on SNP for multiplexed scRNA-seq data")
(description
"This package provides a deconvolution based on Single Nucleotide
Position (SNP) for multiplexed scRNA-seq data. The name vireo stand for
Variational Inference for Reconstructing Ensemble Origin by expressed SNPs in
multiplexed scRNA-seq data and follows the clone identification from
single-cell data named @url{https://github.com/PMBio/cardelino, cardelino}.")
(license license:asl2.0)))
(license license:asl2.0))))
(define-public ccwl
(package