From cd5bbb9b4227a29bc954db7de2e8d76b9d24bd67 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 21 Sep 2022 22:16:28 +0200 Subject: [PATCH] gnu: python-cooler: Do not use flake8. * gnu/packages/bioinformatics.scm (python-cooler)[arguments]: Add build phase 'do-not-use-flake8. --- gnu/packages/bioinformatics.scm | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 58666cd6664..fb4d93769ec 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -12736,6 +12736,12 @@ fasta subsequences.") (substitute* '("requirements.txt" "cooler.egg-info/requires.txt") (("cytoolz.*<.*0.11") "cytoolz")))) + ;; This version of flake8 just won't work with this version of + ;; pytest, because of dependency pinning. + (add-after 'unpack 'do-not-use-flake8 + (lambda _ + (substitute* "setup.cfg" + (("addopts = --flake8") "addopts = ")))) (add-after 'unpack 'patch-tests (lambda _ (substitute* "tests/test_create.py"