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gnu: Add r-wppi.
* gnu/packages/bioconductor.scm (r-wppi): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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@ -9315,6 +9315,47 @@ imports from AIA/ANDI NetCDF, mzXML, mzData and mzML files. It preprocesses
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data for high-throughput, untargeted analyte profiling.")
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data for high-throughput, untargeted analyte profiling.")
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(license license:gpl2+)))
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(license license:gpl2+)))
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(define-public r-wppi
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(package
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(name "r-wppi")
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(version "1.2.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "wppi" version))
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(sha256
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(base32
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"1spwa8p6w3pyw21dvd1lrhcz1sphdsmsd408jv55ss9nbgvgrp23"))))
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(properties `((upstream-name . "wppi")))
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(build-system r-build-system)
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;; This is necessary because omnipathr attempts to write a configuration
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;; file to HOME.
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'set-HOME
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(lambda _ (setenv "HOME" "/tmp"))))))
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(propagated-inputs (list r-dplyr
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r-igraph
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r-logger
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r-magrittr
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r-matrix
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r-omnipathr
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r-progress
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r-purrr
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r-rcurl
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r-rlang
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r-tibble
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r-tidyr))
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(native-inputs (list r-knitr))
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(home-page "https://github.com/AnaGalhoz37/wppi")
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(synopsis "Weighting protein-protein interactions")
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(description
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"This package predicts functional relevance of protein-protein
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interactions based on functional annotations such as Human Protein Ontology
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and Gene Ontology, and prioritizes genes based on network topology, functional
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scores and a path search algorithm.")
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(license license:expat)))
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(define-public r-wrench
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(define-public r-wrench
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(package
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(package
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(name "r-wrench")
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(name "r-wrench")
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