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gnu: Move python-pysnptools to (gnu packages bioinformatics).

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* gnu/packages/python-xyz.scm (python-pysnptools): Move from here...
* gnu/packages/bioinformatics.scm (python-pysnptools): ...to here.

Change-Id: I4dbd9cbe3f2d9a6dd4906be79b78862b39a57c28
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Ricardo Wurmus 2025-01-16 22:53:44 +01:00
parent 84119015a3
commit def1f7ba66
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GPG key ID: 197A5888235FACAC
2 changed files with 42 additions and 42 deletions
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42
gnu/packages/bioinformatics.scm
View file

@ -3406,6 +3406,48 @@ annotation, provides Python genomic feature search and sequence retrieval from
the managed genomes, STAR indexing and mapping and more.") the managed genomes, STAR indexing and mapping and more.")
(license license:gpl3+)))) (license license:gpl3+))))
(define-public python-pysnptools
(package
(name "python-pysnptools")
(version "0.5.14")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pysnptools" version))
(sha256
(base32
"1babnyky5fk93as1ybdvpz9x3x5099gkgscxflngzfswin23mspk"))))
(build-system pyproject-build-system)
;; Tests require test data from python-bed-reader, which fetches data with
;; python-pooch.
(arguments (list #:tests? #f))
(propagated-inputs
(list python-bed-reader
python-cloudpickle
python-h5py
python-more-itertools
python-numpy
python-pandas
python-psutil
python-scipy))
(native-inputs
(list python-pytest
python-pytest-cov
python-pytest-datadir
python-pytest-doctestplus
python-setuptools
python-sphinx
python-sphinx-rtd-theme
python-wheel))
(home-page "http://microsoftgenomics.github.io/PySnpTools/")
(synopsis "Library for reading and manipulating genetic data")
(description
"PySnpTools is a library for reading and manipulating genetic data. It
can, for example, efficiently read whole PLINK *.bed/bim/fam files or parts of
those files. It can also efficiently manipulate ranges of integers using set
operators such as union, intersection, and difference.")
(license license:asl2.0)))
(define-public python-ega-download-client (define-public python-ega-download-client
(package (package
(name "python-ega-download-client") (name "python-ega-download-client")

42
gnu/packages/python-xyz.scm
View file

@ -10521,48 +10521,6 @@ snippets with input parameters (e.g., the size of an array) and plotting
the results.") the results.")
(license license:gpl3+))) (license license:gpl3+)))
(define-public python-pysnptools
(package
(name "python-pysnptools")
(version "0.5.14")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pysnptools" version))
(sha256
(base32
"1babnyky5fk93as1ybdvpz9x3x5099gkgscxflngzfswin23mspk"))))
(build-system pyproject-build-system)
;; Tests require test data from python-bed-reader, which fetches data with
;; python-pooch.
(arguments (list #:tests? #f))
(propagated-inputs
(list python-bed-reader
python-cloudpickle
python-h5py
python-more-itertools
python-numpy
python-pandas
python-psutil
python-scipy))
(native-inputs
(list python-pytest
python-pytest-cov
python-pytest-datadir
python-pytest-doctestplus
python-setuptools
python-sphinx
python-sphinx-rtd-theme
python-wheel))
(home-page "http://microsoftgenomics.github.io/PySnpTools/")
(synopsis "Library for reading and manipulating genetic data")
(description
"PySnpTools is a library for reading and manipulating genetic data. It
can, for example, efficiently read whole PLINK *.bed/bim/fam files or parts of
those files. It can also efficiently manipulate ranges of integers using set
operators such as union, intersection, and difference.")
(license license:asl2.0)))
(define-public python-pykdtree (define-public python-pykdtree
(package (package
(name "python-pykdtree") (name "python-pykdtree")