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gnu: Add r-variantfiltering.

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* gnu/packages/bioconductor.scm (r-variantfiltering): New variable.
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Ricardo Wurmus 2019-09-15 22:41:03 +02:00
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gnu/packages/bioconductor.scm
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@ -5838,3 +5838,50 @@ course data which includes dimensionality reduction, clustering, two-sample
differential expression testing and gene ranking techniques. The package also differential expression testing and gene ranking techniques. The package also
provides methods for retrieving enriched pathways.") provides methods for retrieving enriched pathways.")
(license license:lgpl3+))) (license license:lgpl3+)))
(define-public r-variantfiltering
(package
(name "r-variantfiltering")
(version "1.20.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "VariantFiltering" version))
(sha256
(base32
"0vpghxacqcbaxx2scb5gfhcmfpw1lkls7h6qnbwbnmjwy01q2p17"))))
(properties
`((upstream-name . "VariantFiltering")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
("r-biostrings" ,r-biostrings)
("r-bsgenome" ,r-bsgenome)
("r-dt" ,r-dt)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-genomicscores" ,r-genomicscores)
("r-graph" ,r-graph)
("r-gviz" ,r-gviz)
("r-iranges" ,r-iranges)
("r-rbgl" ,r-rbgl)
("r-rsamtools" ,r-rsamtools)
("r-s4vectors" ,r-s4vectors)
("r-shiny" ,r-shiny)
("r-shinyjs" ,r-shinyjs)
("r-shinythemes" ,r-shinythemes)
("r-shinytree" ,r-shinytree)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-variantannotation" ,r-variantannotation)
("r-xvector" ,r-xvector)))
(home-page "https://github.com/rcastelo/VariantFiltering")
(synopsis "Filtering of coding and non-coding genetic variants")
(description
"Filter genetic variants using different criteria such as inheritance
model, amino acid change consequence, minor allele frequencies across human
populations, splice site strength, conservation, etc.")
(license license:artistic2.0)))