diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 577f1d9779b..649e9be4221 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -14,6 +14,7 @@ ;;; Copyright © 2021 Nicolas Vallet ;;; Copyright © 2023 Navid Afkhami ;;; Copyright © 2024 Spencer King +;;; Copyright © 2024, 2025 Janneke Nieuwenhuizen ;;; ;;; This file is part of GNU Guix. ;;; @@ -23245,6 +23246,23 @@ printing and plotting @code{aCGH} objects.") "1s1s00b6mrv710x14vnscs99iinqq5pml684vpgbshlvszzyw71h")))) (properties `((upstream-name . "ACME"))) (build-system r-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-before 'install 'relax-gcc-14-strictness + (lambda _ + ;; XXX FIXME: $HOME/.R/Makevars seems to be the only way to + ;; set custom CFLAGS for R? + (setenv "HOME" (getcwd)) + (mkdir-p ".R") + (with-directory-excursion ".R" + (with-output-to-file "Makevars" + (lambda _ + (display + (string-append + "CFLAGS=-g -O2" + " -Wno-error=incompatible-pointer-types\n")))))))))) (propagated-inputs (list r-biobase r-biocgenerics)) (home-page "https://bioconductor.org/packages/aCGH/") (synopsis "Calculating microarray enrichment")