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gnu: Further simplify package inputs.
This is the result of running: ./pre-inst-env guix style --input-simplification=safe and manually undoing changes on a dozen of packages to reduce rebuilds (derivations for emacs, icecat, and libreoffice are unchanged.)
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94 changed files with 1544 additions and 2077 deletions
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@ -1510,14 +1510,14 @@ used visualizations.")
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"07vr27rv3z86ajd62c0ilvfgz9z35qsiwwi5pv4sygbhnnjwh3rc"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-ggplot2" ,r-ggplot2)
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("r-kernsmooth" ,r-kernsmooth)
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("r-matrixstats" ,r-matrixstats)
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("r-patchwork" ,r-patchwork)
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("r-pbapply" ,r-pbapply)
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("r-statmod" ,r-statmod)
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("r-survey" ,r-survey)
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("r-viridislite" ,r-kernsmooth)))
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(list r-ggplot2
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r-kernsmooth
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r-matrixstats
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r-patchwork
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r-pbapply
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r-statmod
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r-survey
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r-kernsmooth))
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(home-page "https://github.com/borishejblum/dearseq")
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(synopsis "DEA for RNA-seq data through a robust variance component test")
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(description
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@ -3578,30 +3578,30 @@ throughput genetic sequencing data sets using regression methods.")
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(native-inputs
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(list r-knitr))
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-biostrings" ,r-biostrings)
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("r-bsgenome" ,r-bsgenome)
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;; These two packages are suggested packages
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("r-bsgenome-hsapiens-1000g" ,r-bsgenome-hsapiens-1000genomes-hs37d5)
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("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
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("r-cowplot" ,r-cowplot)
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("r-dplyr" ,r-dplyr)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicranges" ,r-genomicranges)
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("r-ggalluvial" ,r-ggalluvial)
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("r-ggdendro" ,r-ggdendro)
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("r-ggplot2" ,r-ggplot2)
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("r-iranges" ,r-iranges)
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("r-magrittr" ,r-magrittr)
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("r-nmf" ,r-nmf)
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("r-pracma" ,r-pracma)
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("r-purrr" ,r-purrr)
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("r-rcolorbrewer" ,r-rcolorbrewer)
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("r-s4vectors" ,r-s4vectors)
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("r-stringr" ,r-stringr)
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("r-tibble" ,r-tibble)
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("r-tidyr" ,r-tidyr)
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("r-variantannotation" ,r-variantannotation)))
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(list r-biocgenerics
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r-biostrings
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r-bsgenome
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;; These two packages are suggested packages
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r-bsgenome-hsapiens-1000genomes-hs37d5
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r-bsgenome-hsapiens-ucsc-hg19
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r-cowplot
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r-dplyr
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r-genomeinfodb
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r-genomicranges
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r-ggalluvial
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r-ggdendro
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r-ggplot2
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r-iranges
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r-magrittr
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r-nmf
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r-pracma
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r-purrr
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r-rcolorbrewer
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r-s4vectors
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r-stringr
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r-tibble
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r-tidyr
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r-variantannotation))
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(home-page "https://bioconductor.org/packages/MutationalPatterns/")
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(synopsis "Extract and visualize mutational patterns in genomic data")
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(description "This package provides an extensive toolset for the
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