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gnu: r-genomeinfodb: Update to 1.42.3.

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* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.42.3.
[properties]: Record updater-ignored-native-inputs.

Change-Id: I823a2dbd187381adee79fcc941e133a6171f4cc6
This commit is contained in:
Ricardo Wurmus 2025-02-27 12:20:18 +01:00
parent 2fcb750fec
commit e45ffc2f07
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1 changed files with 8 additions and 5 deletions
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gnu/packages/bioconductor.scm
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@ -9597,23 +9597,26 @@ genomic intervals. In addition, it can use BAM or BigWig files as input.")
(define-public r-genomeinfodb
(package
(name "r-genomeinfodb")
(version "1.42.0")
(version "1.42.3")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "GenomeInfoDb" version))
(sha256
(base32
"070llxf6qv3yhs46riff02myghb4gni8510dppdcbfizg0mf41ba"))))
"0blvkdgswypd0dhdq9m8y83kqppynng691dj6xyh3v5s8cr5d8ml"))))
(properties
`((upstream-name . "GenomeInfoDb")))
'((upstream-name . "GenomeInfoDb")
(updater-ignored-native-inputs
;; Avoid dependency cycle.
. ("r-genomicranges"
"r-txdb-dmelanogaster-ucsc-dm3-ensgene"))))
(build-system r-build-system)
;; Tests attempt to download files.
(arguments (list #:tests? #false))
(propagated-inputs
(list r-biocgenerics r-genomeinfodbdata r-iranges r-s4vectors
r-ucsc-utils))
(native-inputs
(list r-knitr))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/GenomeInfoDb")
(synopsis "Utilities for manipulating chromosome identifiers")
(description