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gnu: python-anndata: Update to 0.11.1.

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* gnu/packages/python-xyz.scm (python-anndata): Update to 0.11.1.
[arguments]: Update list of disabled tests; do not patch conftest.
[native-inputs]: Add python-pytest-mock.

Change-Id: I6f087bb19a71006fd9f9c2c92150fa4d038fa2a6
This commit is contained in:
Ricardo Wurmus 2025-01-06 10:14:34 +01:00
parent 2e3d4f16d4
commit e539135b3e
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GPG key ID: 197A5888235FACAC
1 changed files with 5 additions and 10 deletions
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gnu/packages/python-xyz.scm
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@ -29593,7 +29593,7 @@ N-dimensional arrays for Python.")
(define-public python-anndata
(package
(name "python-anndata")
(version "0.10.7")
(version "0.11.1")
(source
(origin
;; The tarball from PyPi doesn't include tests.
@ -29604,24 +29604,18 @@ N-dimensional arrays for Python.")
(file-name (git-file-name name version))
(sha256
(base32
"1i08rm1xnsnq12rjv4virgdx61bra1gsfagjdq0kcpz8npxqa0as"))))
"0skmjjvxk5gdsx6fkplszff92jsb4l45j23c6mhq1vdi3wqhqhcw"))))
(build-system pyproject-build-system)
(arguments
(list
#:test-flags
'(list "-k" (string-append "not concatenation.rst"
;; fixture 'mocker' not found
" and not test_consecutive_bool"))
;; This one test seemingly freezes
'(list "-k" "not test_read_lazy_h5_cluster")
#:phases
#~(modify-phases %standard-phases
;; Doctests require scanpy from (gnu packages bioinformatics)
(add-after 'unpack 'disable-doctests
(lambda _
(substitute* "conftest.py"
(("import pytest")
(string-append "import pytest\nimport _pytest\n"))
(("pytest.DoctestItem")
"_pytest.doctest.DoctestItem"))
(substitute* "pyproject.toml"
(("--doctest-modules") ""))))
(add-before 'build 'set-version
@ -29657,6 +29651,7 @@ N-dimensional arrays for Python.")
python-loompy
python-matplotlib
python-pytest
python-pytest-mock
python-pytest-doctestplus
python-pytest-xdist
python-toml