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gnu: python-anndata: Update to 0.7.6.

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* gnu/packages/python-xyz.scm (python-anndata): Update to 0.7.6.
This commit is contained in:
Roel Janssen 2021-06-01 10:20:10 +02:00
parent 29745d23b8
commit e639da604f
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1 changed files with 25 additions and 10 deletions
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gnu/packages/python-xyz.scm
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@ -21061,28 +21061,41 @@ N-dimensional arrays for Python.")
(define-public python-anndata (define-public python-anndata
(package (package
(name "python-anndata") (name "python-anndata")
(version "0.7.1") (version "0.7.6")
(source (source
(origin (origin
(method url-fetch) (method url-fetch)
(uri (pypi-uri "anndata" version)) (uri (pypi-uri "anndata" version))
(sha256 (sha256
(base32 (base32
"0rnfbpr55j1a1bi2kd4mz444741hrn74kz90h5rnjr59jmpfnh09")))) "1ch8yp0xmag6z0kl01pljm35lbbwax7lrimfhiclpkd4m6xngk53"))))
(build-system python-build-system) (build-system python-build-system)
(arguments (arguments
`(#:phases `(#:tests? #f ; The tarball from PyPi doesn't include tests.
#:phases
(modify-phases %standard-phases (modify-phases %standard-phases
(add-after 'unpack 'delete-inconvenient-tests
(lambda _
;; This test depends on python-scikit-learn.
(delete-file "anndata/tests/test_inplace_subset.py")
#t))
(delete 'check) (delete 'check)
(add-after 'install 'check (add-before 'build 'relax-dependency-requirements
(lambda _
;; We need to upgrade python-pandas to avoid
;; https://github.com/pandas-dev/pandas/issues/35446
(substitute* "pyproject.toml"
(("pandas>=1.1.1") "pandas>=1.0.5"))))
(replace 'build
(lambda _
;; ZIP does not support timestamps before 1980.
(setenv "SOURCE_DATE_EPOCH" "315532800")
(invoke "flit" "build")))
(replace 'install
(lambda* (#:key inputs outputs #:allow-other-keys) (lambda* (#:key inputs outputs #:allow-other-keys)
(add-installed-pythonpath inputs outputs) (add-installed-pythonpath inputs outputs)
(invoke "pytest" "-vv")))))) (let ((out (assoc-ref outputs "out")))
(for-each (lambda (wheel)
(format #true wheel)
(invoke "python" "-m" "pip" "install"
wheel (string-append "--prefix=" out)))
(find-files "dist" "\\.whl$")))
#t)))))
(propagated-inputs (propagated-inputs
`(("python-h5py" ,python-h5py) `(("python-h5py" ,python-h5py)
("python-importlib-metadata" ,python-importlib-metadata) ("python-importlib-metadata" ,python-importlib-metadata)
@ -21095,6 +21108,8 @@ N-dimensional arrays for Python.")
(native-inputs (native-inputs
`(("python-joblib" ,python-joblib) `(("python-joblib" ,python-joblib)
("python-pytest" ,python-pytest) ("python-pytest" ,python-pytest)
("python-toml" ,python-toml)
("python-flit" ,python-flit)
("python-setuptools-scm" ,python-setuptools-scm))) ("python-setuptools-scm" ,python-setuptools-scm)))
(home-page "https://github.com/theislab/anndata") (home-page "https://github.com/theislab/anndata")
(synopsis "Annotated data for data analysis pipelines") (synopsis "Annotated data for data analysis pipelines")