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gnu: r-affyplm: Add missing inputs and disable tests.

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* gnu/packages/bioconductor.scm (r-affyplm)[native-inputs]: Add r-affydata and
r-hgu95av2cdf.
[arguments]: Disable tests.
[properties]: Tell updater to keep extra input.

Change-Id: I05778ba527078d46e955a752a2b1af075508fdf0
This commit is contained in:
Ricardo Wurmus 2024-11-29 21:56:24 +01:00
parent 0e1b5c7d44
commit eb04b8ca59
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GPG key ID: 197A5888235FACAC
1 changed files with 6 additions and 1 deletions
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7
gnu/packages/bioconductor.scm
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@ -3822,8 +3822,12 @@ limma packages.")
(uri (bioconductor-uri "affyPLM" version)) (uri (bioconductor-uri "affyPLM" version))
(sha256 (sha256
(base32 "182zym9g8rzyrmj78yzpdh44av616x6228xzxwa45wz2spg9bj47")))) (base32 "182zym9g8rzyrmj78yzpdh44av616x6228xzxwa45wz2spg9bj47"))))
(properties `((upstream-name . "affyPLM"))) (properties
`((upstream-name . "affyPLM")
(updater-extra-native-inputs . ("r-hgu95av2cdf"))))
(build-system r-build-system) (build-system r-build-system)
;; Tests fail with: return code from pthread_create() is 22
(arguments (list #:tests? #false))
(inputs (list zlib)) (inputs (list zlib))
(propagated-inputs (propagated-inputs
(list r-affy (list r-affy
@ -3832,6 +3836,7 @@ limma packages.")
r-gcrma r-gcrma
r-preprocesscore r-preprocesscore
r-zlibbioc)) r-zlibbioc))
(native-inputs (list r-affydata r-hgu95av2cdf))
(home-page "https://github.com/bmbolstad/affyPLM") (home-page "https://github.com/bmbolstad/affyPLM")
(synopsis "Methods for fitting probe-level models") (synopsis "Methods for fitting probe-level models")
(description (description