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gnu: vembrane: Update to 1.0.7.

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* gnu/packages/bioinformatics.scm (vembrane): Update to 1.0.7.
[arguments] <phases>: Remove 'relax-requirements; add 'use-poetry-core.
[native-inputs]: Remove poetry; add python-poetry-core.

Change-Id: I50aca480b3aded3714d6e999efd3d12a4513e6a3
This commit is contained in:
Sharlatan Hellseher 2025-08-15 23:26:48 +01:00
parent 7235868525
commit eb580ae9ce
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1 changed files with 17 additions and 14 deletions
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gnu/packages/bioinformatics.scm
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@ -21337,32 +21337,35 @@ repeated areas between contigs.")
(define-public vembrane (define-public vembrane
(package (package
(name "vembrane") (name "vembrane")
(version "0.13.2") (version "1.0.7")
(source (origin (source (origin
(method git-fetch) (method git-fetch)
(uri (git-reference (uri (git-reference
(url "https://github.com/vembrane/vembrane") (url "https://github.com/vembrane/vembrane")
(commit (string-append "v" version)))) (commit (string-append "v" version))))
(file-name (git-file-name name version)) (file-name (git-file-name name version))
(sha256 (sha256
(base32 (base32
"1gdih56gpqd8ks3sd4ah844kac09hi3g073k9gvazb32ah50900w")))) "127wmwj0162nfaql68jwxlkz7rbnjya70xrj4j8zwvcnxcj7x5v3"))))
(build-system pyproject-build-system) (build-system pyproject-build-system)
(arguments (arguments
(list (list
#:phases #:phases
'(modify-phases %standard-phases #~(modify-phases %standard-phases
(add-after 'unpack 'relax-requirements (add-after 'unpack 'use-poetry-core
(lambda _ (lambda _
(substitute* "pyproject.toml" ;; Patch to use the core poetry API.
(("pysam = \"\\^0.19\"") "pysam = \"^0.20\"") (substitute* "pyproject.toml"
(("numpy = \\{ version = \"\\^1.23\"") (("poetry.masonry.api") "poetry.core.masonry.api")))))))
"numpy = { version = \"^1\"")))))))
(inputs (inputs
(list python-asttokens python-intervaltree python-numpy (list python-asttokens
python-pysam python-pyyaml)) python-intervaltree
python-numpy
python-pysam
python-pyyaml))
(native-inputs (native-inputs
(list poetry python-pytest)) (list python-poetry-core
python-pytest))
(home-page "https://github.com/vembrane/vembrane") (home-page "https://github.com/vembrane/vembrane")
(synopsis "Filter VCF/BCF files with Python expressions") (synopsis "Filter VCF/BCF files with Python expressions")
(description "Vembrane simultaneously filters variants based on (description "Vembrane simultaneously filters variants based on