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Merge branch 'master' into staging

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Marius Bakke 2022-12-28 01:02:47 +01:00
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gnu/packages/databases.scm
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@ -174,6 +174,7 @@
#:use-module (guix build-system go)
#:use-module (guix build-system meson)
#:use-module (guix build-system perl)
#:use-module (guix build-system pyproject)
#:use-module (guix build-system python)
#:use-module (guix build-system qt)
#:use-module (guix build-system ruby)
@ -487,14 +488,14 @@ mapping from string keys to string values.")
(define-public memcached
(package
(name "memcached")
(version "1.6.16")
(version "1.6.17")
(source
(origin
(method url-fetch)
(uri (string-append
"https://memcached.org/files/memcached-" version ".tar.gz"))
(sha256
(base32 "1nilmfhy8hc7zzlihnx3hmiqf7siyrpgz2g5s3r3l36xy4xsjl9h"))))
(base32 "090jpprdjhbr1v9ph15s077bj8ryrsnz1ydg54aw53rxc5ry6m90"))))
(build-system gnu-build-system)
(inputs
(list libevent cyrus-sasl))
@ -577,13 +578,13 @@ the API, and provides features such as:
(define-public python-pylibmc
(package
(name "python-pylibmc")
(version "1.6.1")
(version "1.6.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pylibmc" version))
(sha256
(base32 "1sg7d9j0v6g3xg3finf4l1hb72c13vcyyi6rqrc9shbx903d93ca"))))
(base32 "1q06696lxpqn155sydg3z6dksimks6n35q72zdjsvarpal8ldypf"))))
(build-system python-build-system)
(arguments
'(#:phases
@ -593,7 +594,7 @@ the API, and provides features such as:
(lambda _
(invoke "memcached" "-d"))))))
(native-inputs
(list memcached python-nose))
(list memcached python-pytest))
(inputs
(list libmemcached zlib cyrus-sasl))
(home-page "http://sendapatch.se/projects/pylibmc/")
@ -1572,14 +1573,14 @@ types are supported, as is encryption.")
(define-public emacs-rec-mode
(package
(name "emacs-rec-mode")
(version "1.9.0")
(version "1.9.1")
(source (origin
(method url-fetch)
(uri (string-append "https://elpa.gnu.org/packages/"
"rec-mode-" version ".tar"))
(sha256
(base32
"1w1q6kh567fd8xismq9i6wr1y893lypd30l452yvydi1qjiq1n6x"))
"0f60bw07l6kk1kkjjxsk30p6rxj9mpngaxqy8piyabnijfgjzd3s"))
(snippet #~(begin (delete-file "rec-mode.info")))))
(build-system emacs-build-system)
(arguments
@ -2795,7 +2796,7 @@ semantics.")
(define-public libpqxx
(package
(name "libpqxx")
(version "7.7.3")
(version "7.7.4")
(source (origin
(method git-fetch)
(uri (git-reference
@ -2804,7 +2805,7 @@ semantics.")
(file-name (git-file-name name version))
(sha256
(base32
"1mrhsih5bhiin0l3c4vp22l9p7c5035m0vvqpx18c0407fkzc7hp"))))
"1qwpfba8g55jjv0xnsk4hhf2cmhk7mdirxx115cvnjjw97ppy0z0"))))
(build-system gnu-build-system)
(native-inputs (list gcc-11 python-wrapper))
(inputs (list postgresql))
@ -2937,13 +2938,13 @@ with Python's asyncio framework.")
(define-public python-asyncmy
(package
(name "python-asyncmy")
(version "0.2.3")
(version "0.2.5")
(source
(origin
(method url-fetch)
(uri (pypi-uri "asyncmy" version))
(sha256
(base32 "19p81jd4w7m7v2x1jdrwibp67wzqx1a7rdw5n4qqmch3iffp97vn"))))
(base32 "0i18zxy6xvzv6dk791xifn2sw2q4zvqwpzrzy8qx51d3mp8z6gng"))))
(build-system python-build-system)
(native-inputs (list python-cython))
(home-page "https://github.com/long2ice/asyncmy")
@ -3089,13 +3090,13 @@ or languages. It uses only Python's built-in data types.")
(define-public python-pyodbc
(package
(name "python-pyodbc")
(version "4.0.32")
(version "4.0.35")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pyodbc" version))
(sha256
(base32 "0sqs0x2l5mk3yv0wwz3ya8yh5f4babihyhc8hjbf2m86b71z1rcv"))
(base32 "1j7577acd2f16zifw49ajg0aw7vm0pdg6jxrr1dlaa5rx14azfcj"))
(modules '((guix build utils)))
(snippet
;; Delete precompiled binaries. The corresponding source is included.
@ -3403,14 +3404,13 @@ framework.")
(define-public python-sqlalchemy-utils
(package
(name "python-sqlalchemy-utils")
(version "0.38.2")
(version "0.38.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "SQLAlchemy-Utils" version))
(sha256
(base32
"1d6fq81489kqzxmk3l6f39sinw206lzs392frmpr5lsjzg9xc0cy"))))
(base32 "0k8z0mjhvdv302kn0nhci8b2dgw4cn2akprsf37ma1540ykgp6lz"))))
(build-system python-build-system)
(arguments
'(#:tests? #f)) ; FIXME: Many tests require a running database server.
@ -3542,7 +3542,7 @@ PickleShare.")
(define-public python-apsw
(package
(name "python-apsw")
(version "3.39.2.1")
(version "3.40.0.0")
;; The compressed release has fetching functionality disabled.
(source
(origin
@ -3552,24 +3552,23 @@ PickleShare.")
version "/apsw-" version ".zip"))
(sha256
(base32
"06x3qgg71xz8l3kz8gz04wkfp5f6zfrg476a4mm1c5hikqyw6ykj"))
;; Cherry-picked from upstream, remove when bumping to 3.39.3.
(patches
(search-patches "python-apsw-3.39.2.1-test-fix.patch"))))
(build-system python-build-system)
(native-inputs (list unzip))
(inputs (list sqlite-next)) ;SQLite 3.39 required.
"02sgja00azvd08wi2wm105apmhp2644s7aw9b1zdg3dkcwjnsiad"))))
(build-system pyproject-build-system)
(native-inputs
(list python-cython unzip))
(inputs (list sqlite-next)) ;SQLite 3.40 required.
(arguments
(list #:phases
#~(modify-phases %standard-phases
(replace 'build
(lambda _
(invoke "python" "setup.py" "build" "--enable-all-extensions"
"--enable=load_extension")))
(add-after 'build 'build-test-helper
(lambda _
(invoke "gcc" "-fPIC" "-shared" "-o" "./testextension.sqlext"
"-I." "-Isqlite3" "src/testextension.c"))))))
(list
#:phases
#~(modify-phases %standard-phases
(add-before 'build 'build-extensions
(lambda _
(invoke "python" "setup.py" "build" "--enable-all-extensions"
"--enable=load_extension")))
(add-after 'build 'build-test-helper
(lambda _
(invoke "gcc" "-fPIC" "-shared" "-o" "./testextension.sqlext"
"-I." "-Isqlite3" "src/testextension.c"))))))
(home-page "https://github.com/rogerbinns/apsw/")
(synopsis "Another Python SQLite Wrapper")
(description
@ -3638,13 +3637,13 @@ managers for automatically closing connections.")
(define-public python-psycopg2
(package
(name "python-psycopg2")
(version "2.9.3")
(version "2.9.5")
(source
(origin
(method url-fetch)
(uri (pypi-uri "psycopg2" version))
(sha256
(base32 "1099as8ind9kpz30rmqzc3nir668fmpkxwayrj2sjka3ycdiv14f"))))
(base32 "0ni4kq6p7hbkm2qsky998q36q5gq5if4nwd8hwhjx5rsd0p6s955"))))
(build-system python-build-system)
(arguments
;; Tests would require a postgresql database "psycopg2_test"
@ -3960,7 +3959,7 @@ reasonable substitute.")
(define-public python-rq
(package
(name "python-rq")
(version "1.11")
(version "1.11.1")
(source
(origin
(method git-fetch)
@ -3969,7 +3968,7 @@ reasonable substitute.")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "1dj3m8dh9vf1qiq1drjhfw5xbr975v1kpzn4fwja83cfd7jrpzvy"))))
(base32 "0dnjm2s036l4j4ypq0h903vh132dp2wiwjrn8jicz1nw829dqpzf"))))
(build-system python-build-system)
(arguments
'(#:phases (modify-phases %standard-phases
@ -4057,13 +4056,13 @@ is designed to have a low barrier to entry.")
(define-public python-sqlparse
(package
(name "python-sqlparse")
(version "0.4.2")
(version "0.4.3")
(source (origin
(method url-fetch)
(uri (pypi-uri "sqlparse" version))
(sha256
(base32
"1bkx52c2jh28c528b69qfk2ijfzw1laxx6lim7jr8fi6fh67600c"))))
"0s3jyllg0ka0n7pgqfng1hzvh39li853dr40qcp4s4dv8r481jk9"))))
(build-system python-build-system)
(arguments
`(#:phases
@ -4263,6 +4262,138 @@ language-bindings for structure manipulation. It also provides IPC and common
algorithm implementations.")
(license license:asl2.0)))
(define-public apache-arrow-for-ceph
(package
(name "apache-arrow")
(version "6.0.1")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/apache/arrow")
(commit (string-append "apache-arrow-" version))))
(file-name (git-file-name name version))
(sha256
(base32
"0mcw361akqw4sxnnpnr9c9v1zk4hphk6gcq763pcb19yzljh88ig"))))
(build-system cmake-build-system)
(arguments
`(#:tests? #f
#:phases
(modify-phases %standard-phases
(add-before 'configure 'enter-source-directory
(lambda _ (chdir "cpp")))
(add-after 'unpack 'set-env
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "cpp/src/parquet/parquet.pc.in"
(("includedir=\\$\\{prefix\\}/")
"includedir="))
(substitute* "cpp/cmake_modules/ThirdpartyToolchain.cmake"
(("set\\(xsimd_SOURCE.*") ""))
(setenv "BOOST_ROOT" (assoc-ref inputs "boost"))
(setenv "BROTLI_HOME" (assoc-ref inputs "brotli"))
(setenv "FLATBUFFERS_HOME" (assoc-ref inputs "flatbuffers"))
(setenv "RAPIDJSON_HOME" (assoc-ref inputs "rapidjson")))))
#:build-type "Release"
#:configure-flags
(list "-DARROW_PYTHON=ON"
"-DARROW_GLOG=ON"
;; Parquet options
"-DARROW_PARQUET=ON"
"-DPARQUET_BUILD_EXECUTABLES=ON"
;; The maintainers disallow using system versions of
;; jemalloc:
;; https://issues.apache.org/jira/browse/ARROW-3507. This
;; is unfortunate because jemalloc increases performance:
;; https://arrow.apache.org/blog/2018/07/20/jemalloc/.
"-DARROW_JEMALLOC=OFF"
;; The CMake option ARROW_DEPENDENCY_SOURCE is a global
;; option that instructs the build system how to resolve
;; each dependency. SYSTEM = Finding the dependency in
;; system paths using CMake's built-in find_package
;; function, or using pkg-config for packages that do not
;; have this feature
"-DARROW_DEPENDENCY_SOURCE=SYSTEM"
"-Dxsimd_SOURCE=SYSTEM"
"-DARROW_RUNTIME_SIMD_LEVEL=NONE"
"-DARROW_SIMD_LEVEL=NONE"
"-DARROW_PACKAGE_KIND=Guix"
;; Split output into its component packages.
(string-append "-DCMAKE_INSTALL_PREFIX="
(assoc-ref %outputs "lib"))
(string-append "-DCMAKE_INSTALL_RPATH="
(assoc-ref %outputs "lib")
"/lib")
(string-append "-DCMAKE_INSTALL_BINDIR="
(assoc-ref %outputs "out")
"/bin")
(string-append "-DCMAKE_INSTALL_INCLUDEDIR="
(assoc-ref %outputs "include")
"/share/include")
"-DARROW_WITH_SNAPPY=ON"
"-DARROW_WITH_ZLIB=ON"
"-DARROW_WITH_ZSTD=ON"
"-DARROW_WITH_LZ4=ON"
"-DARROW_COMPUTE=ON"
"-DARROW_CSV=ON"
"-DARROW_DATASET=ON"
"-DARROW_FILESYSTEM=ON"
"-DARROW_HDFS=ON"
"-DARROW_JSON=ON"
;; Arrow Python C++ integration library (required for
;; building pyarrow). This library must be built against
;; the same Python version for which you are building
;; pyarrow. NumPy must also be installed. Enabling this
;; option also enables ARROW_COMPUTE, ARROW_CSV,
;; ARROW_DATASET, ARROW_FILESYSTEM, ARROW_HDFS, and
;; ARROW_JSON.
"-DARROW_PYTHON=ON"
;; Building the tests forces on all the
;; optional features and the use of static
;; libraries.
"-DARROW_BUILD_TESTS=OFF"
"-DBENCHMARK_ENABLE_GTEST_TESTS=OFF"
;;"-DBENCHMARK_ENABLE_TESTING=OFF"
"-DARROW_BUILD_STATIC=OFF")))
(inputs
(list boost
brotli
bzip2
double-conversion
gflags
glog
grpc
protobuf
python
python-numpy
rapidjson
re2
snappy
xsimd))
;; These are all listed under Requires.private in arrow.pc
(propagated-inputs
(list (list apache-thrift "lib")
lz4
utf8proc
zlib
(list zstd "lib")))
(native-inputs
(list pkg-config))
(outputs '("out" "lib" "include"))
(home-page "https://arrow.apache.org/")
(synopsis "Columnar in-memory analytics")
(description "Apache Arrow is a columnar in-memory analytics layer
designed to accelerate big data. It houses a set of canonical in-memory
representations of flat and hierarchical data along with multiple
language-bindings for structure manipulation. It also provides IPC and common
algorithm implementations.")
(license license:asl2.0)))
(define-public apache-arrow-0.16
(package
(name "apache-arrow")