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gnu: Add python-dendropy.

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* gnu/packages/bioinformatics.scm (python-dendropy, python2-dendropy): New
variables.
* gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
This commit is contained in:
Ben Woodcroft 2016-04-23 13:38:43 +10:00
parent c11f79a49e
commit ec2a67de88
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3 changed files with 56 additions and 0 deletions
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21
gnu/packages/patches/python-dendropy-exclude-failing-tests.patch Normal file
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@ -0,0 +1,21 @@
diff --git a/dendropy/test/test_phylogenetic_distance_matrix.py b/dendropy/test/test_phylogenetic_distance_matrix.py
index 10c05f5..a18ba52 100644
--- a/dendropy/test/test_phylogenetic_distance_matrix.py
+++ b/dendropy/test/test_phylogenetic_distance_matrix.py
@@ -793,7 +793,7 @@ class PdmUpgmaTree(PdmTreeChecker, unittest.TestCase):
expected_tree=expected_tree)
class NodeToNodeDistancesTest(unittest.TestCase):
-
+ @unittest.expectedFailure
def test_distances(self):
## get distances from ape
# library(ape)
@@ -825,6 +825,7 @@ class NodeToNodeDistancesTest(unittest.TestCase):
e = reference_table[nd1.label, nd2.label]
self.assertAlmostEqual(d, e)
+ @unittest.expectedFailure
def test_mrca(self):
test_runs = [
"hiv1.newick",