Merge branch 'master' into core-updates

Conflicts:
	gnu/local.mk
	gnu/packages/bioinformatics.scm
	gnu/packages/django.scm
	gnu/packages/gtk.scm
	gnu/packages/llvm.scm
	gnu/packages/python-web.scm
	gnu/packages/python.scm
	gnu/packages/tex.scm
	guix/build-system/asdf.scm
	guix/build/emacs-build-system.scm
	guix/profiles.scm
This commit is contained in:
Marius Bakke 2021-05-09 21:29:46 +02:00
commit f034264204
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305 changed files with 727921 additions and 145425 deletions

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@ -6,7 +6,7 @@
;;; Copyright © 2017 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2018 Vijayalakshmi Vedantham <vijimay12@gmail.com>
;;; Copyright © 2019 Sam <smbaines8@gmail.com>
;;; Copyright © 2020 Marius Bakke <marius@gnu.org>
;;; Copyright © 2020, 2021 Marius Bakke <marius@gnu.org>
;;; Copyright © 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com>
;;;
;;; This file is part of GNU Guix.
@ -48,13 +48,13 @@
(define-public python-django
(package
(name "python-django")
(version "3.1.8")
(version "3.2.2")
(source (origin
(method url-fetch)
(uri (pypi-uri "Django" version))
(sha256
(base32
"1b0ymqv09b523k3c2jnpb2gjy2fsy6irbfyc2g9x5hjyw41k2fgq"))))
"0gffaabnnpzj0sl3jl7mllvi3gc0jvab6xw2bckvyljwsrd1j78a"))))
(build-system python-build-system)
(arguments
'(#:phases
@ -77,13 +77,21 @@
(string-append " @unittest.skipIf(True, 'Disabled by Guix')\n"
all)))))
(replace 'check
(lambda _
(with-directory-excursion "tests"
(invoke "python" "runtests.py"
;; By default tests run in parallel, which may cause
;; various race conditions. Run sequentially for
;; consistent results.
"--parallel=1")))))))
(lambda* (#:key tests? #:allow-other-keys)
(if tests?
(with-directory-excursion "tests"
(invoke "python" "runtests.py"
;; By default tests run in parallel, which may cause
;; various race conditions. Run sequentially for
;; consistent results.
"--parallel=1"))
(format #t "test suite not run~%"))))
;; XXX: The 'wrap' phase adds native inputs as runtime dependencies,
;; see <https://bugs.gnu.org/25235>. The django-admin script typically
;; runs in an environment that has Django and its dependencies on
;; PYTHONPATH, so just disable the wrapper to reduce the size from
;; ~710 MiB to ~203 MiB.
(delete 'wrap))))
;; TODO: Install extras/django_bash_completion.
(native-inputs
`(("tzdata" ,tzdata-for-tests)
@ -91,7 +99,6 @@
;; tests/requirements/py3.txt
("python-docutils" ,python-docutils)
;; optional for tests: ("python-geoip2" ,python-geoip2)
("python-jinja2" ,python-jinja2) ; >= 2.7
;; optional for tests: ("python-memcached" ,python-memcached)
("python-numpy" ,python-numpy)
("python-pillow" ,python-pillow)
@ -99,14 +106,17 @@
;; optional for tests: ("python-selenium" ,python-selenium)
("python-tblib" ,python-tblib)))
(propagated-inputs
`(("python-argon2-cffi" ,python-argon2-cffi)
("python-asgiref" ,python-asgiref)
("python-bcrypt" ,python-bcrypt)
`(("python-asgiref" ,python-asgiref)
("python-pytz" ,python-pytz)
("python-sqlparse" ,python-sqlparse)
;; Optional dependencies.
("python-argon2-cffi" ,python-argon2-cffi)
("python-bcrypt" ,python-bcrypt)
;; This input is not strictly required, but in practice many Django
;; libraries need it for test suites and similar.
("python-sqlparse" ,python-sqlparse)))
("python-jinja2" ,python-jinja2)))
(home-page "https://www.djangoproject.com/")
(synopsis "High-level Python Web framework")
(description
@ -120,13 +130,13 @@ to the @dfn{don't repeat yourself} (DRY) principle.")
(define-public python-django-2.2
(package
(inherit python-django)
(version "2.2.20")
(version "2.2.22")
(source (origin
(method url-fetch)
(uri (pypi-uri "Django" version))
(sha256
(base32
"0r3a6gbhwngxl172yy6n0sq5knibl2vxc0wbk1g8licfbzfgjs95"))))
"0q30zjcmnvwp1v1syn739wapahs2dx784n0yjyypq0cr3kdi88nv"))))
(native-inputs
`(;; XXX: In 2.2 and 3.0, selenium is required for the test suite.
("python-selenium" ,python-selenium)
@ -452,7 +462,7 @@ account authentication.")
(define-public python-django-debug-toolbar
(package
(name "python-django-debug-toolbar")
(version "2.2")
(version "3.2.1")
(source
(origin
(method git-fetch)
@ -462,7 +472,7 @@ account authentication.")
(file-name (git-file-name name version))
(sha256
(base32
"14069rlgjd5g724iaglai0nc636g9km4ba56r4j3k84chibqzn03"))))
"1m1j2sx7q0blma0miswj3c8hrfi5q4y5cq2b816v8gagy89xgc57"))))
(build-system python-build-system)
(propagated-inputs
`(("python-sqlparse" ,python-sqlparse)))
@ -646,7 +656,10 @@ conn_max_age argument to easily enable Djangos connection pool.")
(lambda _
(invoke "python" "-m" "django" "test" "-v2"
"--settings=tests.settings"))))))
(native-inputs `(("python-django" ,python-django)))
(native-inputs
;; XXX: Picklefield has not been updated in 10+ years and fails tests
;; with Django 3.2.
`(("python-django@2.2" ,python-django-2.2)))
(synopsis "Pickled object field for Django")
(description "Pickled object field for Django")
(license license:expat)))
@ -981,18 +994,36 @@ Django projects, which allows association of a number of tags with any
(define-public python-djangorestframework
(package
(name "python-djangorestframework")
(version "3.12.1")
(version "3.12.4")
(source
(origin
(method url-fetch)
(uri (pypi-uri "djangorestframework" version))
(method git-fetch)
(uri (git-reference
(url "https://github.com/encode/django-rest-framework")
(commit version)))
(file-name (git-file-name name version))
(sha256
(base32
"0jb22psb823vh5fj9az63p5lgyax9ygjy2faah16ajxvvsp54i6m"))))
"16n17dw35wqv47m8k8fixn0yywrvd6v4r573yr4nx6lbbiyi2cqn"))))
(build-system python-build-system)
(arguments
'(;; No included tests
#:tests? #f))
'(#:phases
(modify-phases %standard-phases
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
;; Add a fix from the master branch for compatibility with Django
;; 3.2: https://github.com/encode/django-rest-framework/pull/7911
;; Remove for versions > 3.12.4.
(substitute* "tests/test_fields.py"
(("class MockTimezone:")
"class MockTimezone(pytz.BaseTzInfo):"))
(if tests?
(invoke "python" "runtests.py" "--nolint")
(format #t "test suite not run~%")))))))
(native-inputs
`(("python-django" ,python-django)
("python-pytest" ,python-pytest)
("python-pytest-django" ,python-pytest-django)))
(home-page "https://www.django-rest-framework.org")
(synopsis "Toolkit for building Web APIs with Django")
(description
@ -1132,13 +1163,13 @@ FileFields during tests.")
(define-public python-django-auth-ldap
(package
(name "python-django-auth-ldap")
(version "2.2.0")
(version "2.4.0")
(source (origin
(method url-fetch)
(uri (pypi-uri "django-auth-ldap" version))
(sha256
(base32
"1gq49l5lv6ar6yf73c8pix8n7md4109yq31s5jfk64w6n1rigbqi"))))
"0xk6cxiqz5j3q79bd54x64f26alrlc8p7k9wkp2c768w2k1vzz30"))))
(build-system python-build-system)
(arguments
'(#:phases (modify-phases %standard-phases
@ -1205,8 +1236,7 @@ to ElasticSearch.")
(native-inputs
`(("python-django" ,python-django)))
(propagated-inputs
`(("python-ipaddress" ,python-ipaddress)
("python-netaddr" ,python-netaddr)
`(("python-netaddr" ,python-netaddr)
("python-six" ,python-six)))
(home-page "https://github.com/jimfunk/django-postgresql-netfields")
(synopsis "PostgreSQL netfields implementation for Django")