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gnu: packages/python-science: Sort packages.
* gnu/packages/python-science.scm: (python-aplus, python-boost-histogram, python-corner, python-decaylanguage, python-fast-histogram, python-hepunits, python-mpl-scatter-density, python-numpy-groupies): Sort variables alphabetically. Change-Id: I026c5a409ebab46c844db7ffe17aa9f5293c36ea
This commit is contained in:
Sharlatan Hellseher
parent
18bc763899
commit
f1c56803ea
1 changed files with 249 additions and 249 deletions
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@ -246,6 +246,23 @@ possibility to differentiate functions that contain matrix functions as
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+,-,*,/, dot, solve, qr, eigh, cholesky.")
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(license license:bsd-3)))
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(define-public python-aplus
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(package
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(name "python-aplus")
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(version "0.11.0")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "aplus" version))
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(sha256
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(base32 "1rznc26nlp641rn8gpdngfp79a3fji38yavqakxi35mx2da04msg"))))
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(build-system python-build-system)
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(home-page "https://github.com/xogeny/aplus")
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(synopsis "Promises/A+ for Python")
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(description "This package is an implementation of the Promises/A+
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specification and test suite in Python.")
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(license license:expat)))
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(define-public python-apted
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;; PyPI release lacks tests and there is no Git tag.
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(let ((commit "828b3e3f4c053f7d35f0b55b0d5597e8041719ac")
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@ -280,6 +297,33 @@ possibility to differentiate functions that contain matrix functions as
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supersedes the RTED algorithm for computing the tree edit distance.")
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(license license:expat))))
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(define-public python-boost-histogram
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(package
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(name "python-boost-histogram")
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(version "1.5.2")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "boost_histogram" version))
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(sha256
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(base32 "0p2f90p5jwlwrjz3hq2fzaifkmny33g2mpi89nnhi3w41f1jxr2i"))))
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(build-system pyproject-build-system)
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;; This package bundles files from Boost::Histogram and doesn't provide
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;; a way to use a system library.
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(propagated-inputs (list python-numpy))
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(native-inputs (list cmake-minimal
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pybind11
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python-pytest
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python-pytest-benchmark
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python-scikit-build-core
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python-setuptools-scm))
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(home-page "https://boost-histogram.readthedocs.io/en/latest/")
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(synopsis "Python bindings for the Boost::Histogram library")
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(description
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"This package provides Python bindings for the Boost::Histogram library,
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one of the fastest libraries for histogramming.")
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(license license:bsd-3)))
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(define-public python-cmocean
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(package
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(name "python-cmocean")
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@ -307,6 +351,63 @@ variables. Most of the colormaps started from @code{matplotlib} colormaps,
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but have now been adjusted using the viscm tool to be perceptually uniform.")
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(license license:expat)))
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(define-public python-corner
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(package
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(name "python-corner")
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(version "2.2.2")
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(source
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(origin
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(method git-fetch) ;no tests in PyPi archive
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(uri (git-reference
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(url "https://github.com/dfm/corner.py")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32 "1i4dk4jxh0saysya2cnsfwlxwpldbdl174i9pwi4qj82av9jr2ii"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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#:test-flags
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#~(list
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;; XXX: Disable tests which failed with mismatched images, check why.
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"-k" (string-append "not test_labels[png]"
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" and not test_title_quantiles[png]"
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" and not test_title_quantiles_default[png]"
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" and not test_title_quantiles_raises[png]"
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" and not test_bins[png]"
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" and not test_bins_log[png]"
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" and not test_titles1[png]"
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" and not test_titles2[png]"
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" and not test_pandas[png]"
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" and not test_tight[png]"
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" and not test_extended_overplotting[png]"
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" and not test_reverse_overplotting[png]"
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" and not test_arviz[png]"
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" and not test_range_fig_arg[png]"))
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#:phases
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#~(modify-phases %standard-phases
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(add-before 'build 'pretend-version
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;; XXX: Make sure you're either building from a fully intact git
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;; repository or PyPI tarballs. Most other sources (such as GitHub's
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;; tarballs, a git checkout without the .git folder) don't contain
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;; the necessary metadata and will not work.
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(lambda _
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(setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version))))))
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(propagated-inputs
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(list python-matplotlib))
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(native-inputs
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(list python-arviz python-pytest python-scipy python-setuptools-scm))
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(home-page "http://corner.readthedocs.io/")
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(synopsis "Make some beautiful corner plots")
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(description
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"This Python module uses @code{matplotlib} to visualize multidimensional
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samples using a scatterplot matrix. In these visualizations, each one- and
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two-dimensional projection of the sample is plotted to reveal covariances.
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corner was originally conceived to display the results of Markov Chain Monte
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Carlo simulations and the defaults are chosen with this application in mind but
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it can be used for displaying many qualitatively different samples.")
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(license license:bsd-2)))
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(define-public python-cvxpy
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(package
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(name "python-cvxpy")
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@ -336,6 +437,41 @@ but have now been adjusted using the viscm tool to be perceptually uniform.")
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optimization problems in Python.")
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(license license:asl2.0)))
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(define-public python-decaylanguage
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(package
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(name "python-decaylanguage")
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(version "0.18.6")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "decaylanguage" version))
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(sha256
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(base32 "0kc9i9k51kg2zv8dwywpigiipxzmyxpzb101imjsvv1licip7b8v"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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;; This file fails to be collected with "DeprecationWarning: setDaemon()
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;; is deprecated, set the daemon attribute instead".
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#:test-flags #~(list "--ignore" "tests/test_convert.py")))
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(propagated-inputs (list python-attrs
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python-graphviz
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python-hepunits
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python-lark
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python-numpy
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python-pandas
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python-particle
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python-plumbum))
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(native-inputs (list python-hatch-vcs
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python-hatchling
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python-pytest))
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(home-page "https://decaylanguage.readthedocs.io/en/latest/")
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(synopsis "Language to describe, manipulate and convert particle decays")
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(description "DecayLanguage implements a language to describe and convert
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particle decays between digital representations, effectively making it
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possible to interoperate several fitting programs. Particular interest is
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given to programs dedicated to amplitude analyses.")
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(license license:bsd-3)))
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(define-public python-ecos
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(package
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(name "python-ecos")
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@ -360,6 +496,44 @@ optimization problems in Python.")
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numerical software for solving convex second-order cone programs (SOCPs).")
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(license license:gpl3)))
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(define-public python-fast-histogram
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(package
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(name "python-fast-histogram")
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(version "0.14")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "fast_histogram" version))
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(sha256
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(base32 "1sk9xa85cgm4sylzblwv3qr2dmm0ic06zkwxqa2xlazjiawp629r"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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#:phases
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#~(modify-phases %standard-phases
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(add-before 'check 'build-extensions
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(lambda _
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(invoke "python" "setup.py" "build_ext" "--inplace"))))))
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(native-inputs
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(list python-hypothesis
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python-pytest
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python-setuptools
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python-setuptools-scm
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python-wheel))
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(propagated-inputs
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(list python-numpy))
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(home-page "https://github.com/astrofrog/fast-histogram")
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(synopsis "Fast simple 1D and 2D histograms")
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(description
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"The fast-histogram mini-package aims to provide simple and fast
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histogram functions for regular bins that don't compromise on performance. It
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doesn't do anything complicated - it just implements a simple histogram
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algorithm in C and keeps it simple. The aim is to have functions that are
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fast but also robust and reliable. The result is a 1D histogram function here
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that is 7-15x faster than @code{numpy.histogram}, and a 2D histogram function
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that is 20-25x faster than @code{numpy.histogram2d}.")
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(license license:bsd-3)))
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(define-public python-formulaic
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(package
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(name "python-formulaic")
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@ -386,6 +560,25 @@ numerical software for solving convex second-order cone programs (SOCPs).")
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formulas for Python.")
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(license license:expat)))
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(define-public python-hepunits
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(package
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(name "python-hepunits")
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(version "2.3.5")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "hepunits" version))
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(sha256
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(base32 "1n1nf2rz2d86qzjmcwykbc16jzsqb45vs8lyksg98b3jd8nwsd4l"))))
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(build-system pyproject-build-system)
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(native-inputs (list python-hatch-vcs python-hatchling python-pytest))
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(home-page "https://github.com/scikit-hep/hepunits")
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(synopsis "Units and constants in the HEP system of units")
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(description "@code{hepunits} collects the most commonly used units and
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constants in the HEP System of Units, as derived from the basic units
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originally defined by the CLHEP project.")
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(license license:bsd-3)))
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(define-public python-imagehash
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(package
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(name "python-imagehash")
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@ -432,6 +625,39 @@ Features:
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@end itemize")
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(license license:bsd-2)))
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(define-public python-mpl-scatter-density
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(package
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(name "python-mpl-scatter-density")
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(version "0.8")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "mpl_scatter_density" version))
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(sha256
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(base32 "0cynk1rk6k2xklgv69difphrz6id77x3xb58kbs4mc4q7z6bvfid"))))
|
||||
(build-system pyproject-build-system)
|
||||
(arguments
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(list
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;; See <https://github.com/astrofrog/mpl-scatter-density/issues/42>.
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#:test-flags #~(list "-k" "not test_default_dpi")))
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(native-inputs
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(list python-pytest
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python-pytest-cov
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python-pytest-mpl
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python-setuptools
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||||
python-setuptools-scm
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python-wheel))
|
||||
(propagated-inputs
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||||
(list python-fast-histogram
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python-matplotlib
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||||
python-numpy))
|
||||
(home-page "https://github.com/astrofrog/mpl-scatter-density")
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||||
(synopsis "Matplotlib helpers to make density scatter plots")
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||||
(description
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||||
"This package provides functionality to make it easy to make scatter
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density maps, both for interactive and non-interactive use.")
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(license license:bsd-2)))
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(define-public python-numdifftools
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(package
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(name "python-numdifftools")
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@ -490,6 +716,29 @@ allowing the user to specify whether complex-step, central, forward or
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backward differences are used.")
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(license license:bsd-3)))
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(define-public python-numpy-groupies
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(package
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(name "python-numpy-groupies")
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(version "0.9.14")
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(source
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||||
(origin
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||||
(method url-fetch)
|
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(uri (pypi-uri "numpy_groupies" version))
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||||
(sha256
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||||
(base32 "000qz0z78rs3l6y0dd2vzvd2lx3mczm2762whwsdnhz6c35axdq1"))))
|
||||
(build-system python-build-system)
|
||||
(native-inputs
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||||
(list python-pytest
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||||
python-pytest-runner
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||||
python-numba
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||||
python-numpy))
|
||||
(home-page "https://github.com/ml31415/numpy-groupies")
|
||||
(synopsis "Tools for group-indexing operations: aggregated sum and more")
|
||||
(description
|
||||
"This package provides optimized tools for group-indexing operations:
|
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aggregated sum and more.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-osqp
|
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(package
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(name "python-osqp")
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||||
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@ -1032,33 +1281,6 @@ logic, also known as grey logic.")
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and scientific computing.")
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(license license:bsd-3)))
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(define-public python-boost-histogram
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(package
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(name "python-boost-histogram")
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(version "1.5.2")
|
||||
(source
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||||
(origin
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||||
(method url-fetch)
|
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(uri (pypi-uri "boost_histogram" version))
|
||||
(sha256
|
||||
(base32 "0p2f90p5jwlwrjz3hq2fzaifkmny33g2mpi89nnhi3w41f1jxr2i"))))
|
||||
(build-system pyproject-build-system)
|
||||
;; This package bundles files from Boost::Histogram and doesn't provide
|
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;; a way to use a system library.
|
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(propagated-inputs (list python-numpy))
|
||||
(native-inputs (list cmake-minimal
|
||||
pybind11
|
||||
python-pytest
|
||||
python-pytest-benchmark
|
||||
python-scikit-build-core
|
||||
python-setuptools-scm))
|
||||
(home-page "https://boost-histogram.readthedocs.io/en/latest/")
|
||||
(synopsis "Python bindings for the Boost::Histogram library")
|
||||
(description
|
||||
"This package provides Python bindings for the Boost::Histogram library,
|
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one of the fastest libraries for histogramming.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-scikit-opt
|
||||
(package
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(name "python-scikit-opt")
|
||||
|
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@ -1506,25 +1728,6 @@ reference testing, constraint discovery for data, automatic inference
|
|||
of regular expressions from text data and automatic test generation.")
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(license license:expat))) ; MIT License
|
||||
|
||||
(define-public python-hepunits
|
||||
(package
|
||||
(name "python-hepunits")
|
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(version "2.3.5")
|
||||
(source
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||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "hepunits" version))
|
||||
(sha256
|
||||
(base32 "1n1nf2rz2d86qzjmcwykbc16jzsqb45vs8lyksg98b3jd8nwsd4l"))))
|
||||
(build-system pyproject-build-system)
|
||||
(native-inputs (list python-hatch-vcs python-hatchling python-pytest))
|
||||
(home-page "https://github.com/scikit-hep/hepunits")
|
||||
(synopsis "Units and constants in the HEP system of units")
|
||||
(description "@code{hepunits} collects the most commonly used units and
|
||||
constants in the HEP System of Units, as derived from the basic units
|
||||
originally defined by the CLHEP project.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-particle
|
||||
(package
|
||||
(name "python-particle")
|
||||
|
|
@ -1553,41 +1756,6 @@ originally defined by the CLHEP project.")
|
|||
particle information and extra goodies.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-decaylanguage
|
||||
(package
|
||||
(name "python-decaylanguage")
|
||||
(version "0.18.6")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "decaylanguage" version))
|
||||
(sha256
|
||||
(base32 "0kc9i9k51kg2zv8dwywpigiipxzmyxpzb101imjsvv1licip7b8v"))))
|
||||
(build-system pyproject-build-system)
|
||||
(arguments
|
||||
(list
|
||||
;; This file fails to be collected with "DeprecationWarning: setDaemon()
|
||||
;; is deprecated, set the daemon attribute instead".
|
||||
#:test-flags #~(list "--ignore" "tests/test_convert.py")))
|
||||
(propagated-inputs (list python-attrs
|
||||
python-graphviz
|
||||
python-hepunits
|
||||
python-lark
|
||||
python-numpy
|
||||
python-pandas
|
||||
python-particle
|
||||
python-plumbum))
|
||||
(native-inputs (list python-hatch-vcs
|
||||
python-hatchling
|
||||
python-pytest))
|
||||
(home-page "https://decaylanguage.readthedocs.io/en/latest/")
|
||||
(synopsis "Language to describe, manipulate and convert particle decays")
|
||||
(description "DecayLanguage implements a language to describe and convert
|
||||
particle decays between digital representations, effectively making it
|
||||
possible to interoperate several fitting programs. Particular interest is
|
||||
given to programs dedicated to amplitude analyses.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-vector
|
||||
(package
|
||||
(name "python-vector")
|
||||
|
|
@ -1729,39 +1897,6 @@ volume computations for simple domains like regular polygons, disks,
|
|||
spheres, cubes, etc.")
|
||||
(license license:gpl3+)))
|
||||
|
||||
(define-public python-mpl-scatter-density
|
||||
(package
|
||||
(name "python-mpl-scatter-density")
|
||||
(version "0.8")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "mpl_scatter_density" version))
|
||||
(sha256
|
||||
(base32 "0cynk1rk6k2xklgv69difphrz6id77x3xb58kbs4mc4q7z6bvfid"))))
|
||||
(build-system pyproject-build-system)
|
||||
(arguments
|
||||
(list
|
||||
;; See <https://github.com/astrofrog/mpl-scatter-density/issues/42>.
|
||||
#:test-flags #~(list "-k" "not test_default_dpi")))
|
||||
(native-inputs
|
||||
(list python-pytest
|
||||
python-pytest-cov
|
||||
python-pytest-mpl
|
||||
python-setuptools
|
||||
python-setuptools-scm
|
||||
python-wheel))
|
||||
(propagated-inputs
|
||||
(list python-fast-histogram
|
||||
python-matplotlib
|
||||
python-numpy))
|
||||
(home-page "https://github.com/astrofrog/mpl-scatter-density")
|
||||
(synopsis "Matplotlib helpers to make density scatter plots")
|
||||
(description
|
||||
"This package provides functionality to make it easy to make scatter
|
||||
density maps, both for interactive and non-interactive use.")
|
||||
(license license:bsd-2)))
|
||||
|
||||
(define-public python-mpsplines
|
||||
;; No release on PyPI no git tag, use the latest commit.
|
||||
(let ((commit "4967655fca8f4d0fc0685486c8ec2f1fe2f199d2")
|
||||
|
|
@ -2714,44 +2849,6 @@ region of practical equivalence (rope), or that the second classifier has
|
|||
higher scores.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-fast-histogram
|
||||
(package
|
||||
(name "python-fast-histogram")
|
||||
(version "0.14")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "fast_histogram" version))
|
||||
(sha256
|
||||
(base32 "1sk9xa85cgm4sylzblwv3qr2dmm0ic06zkwxqa2xlazjiawp629r"))))
|
||||
(build-system pyproject-build-system)
|
||||
(arguments
|
||||
(list
|
||||
#:phases
|
||||
#~(modify-phases %standard-phases
|
||||
(add-before 'check 'build-extensions
|
||||
(lambda _
|
||||
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
|
||||
(native-inputs
|
||||
(list python-hypothesis
|
||||
python-pytest
|
||||
python-setuptools
|
||||
python-setuptools-scm
|
||||
python-wheel))
|
||||
(propagated-inputs
|
||||
(list python-numpy))
|
||||
(home-page "https://github.com/astrofrog/fast-histogram")
|
||||
(synopsis "Fast simple 1D and 2D histograms")
|
||||
(description
|
||||
"The fast-histogram mini-package aims to provide simple and fast
|
||||
histogram functions for regular bins that don't compromise on performance. It
|
||||
doesn't do anything complicated - it just implements a simple histogram
|
||||
algorithm in C and keeps it simple. The aim is to have functions that are
|
||||
fast but also robust and reliable. The result is a 1D histogram function here
|
||||
that is 7-15x faster than @code{numpy.histogram}, and a 2D histogram function
|
||||
that is 20-25x faster than @code{numpy.histogram2d}.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-fastcluster
|
||||
(package
|
||||
(name "python-fastcluster")
|
||||
|
|
@ -3782,29 +3879,6 @@ libraries, Modin provides seamless integration and compatibility with existing
|
|||
pandas code.")
|
||||
(license license:asl2.0)))
|
||||
|
||||
(define-public python-numpy-groupies
|
||||
(package
|
||||
(name "python-numpy-groupies")
|
||||
(version "0.9.14")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "numpy_groupies" version))
|
||||
(sha256
|
||||
(base32 "000qz0z78rs3l6y0dd2vzvd2lx3mczm2762whwsdnhz6c35axdq1"))))
|
||||
(build-system python-build-system)
|
||||
(native-inputs
|
||||
(list python-pytest
|
||||
python-pytest-runner
|
||||
python-numba
|
||||
python-numpy))
|
||||
(home-page "https://github.com/ml31415/numpy-groupies")
|
||||
(synopsis "Tools for group-indexing operations: aggregated sum and more")
|
||||
(description
|
||||
"This package provides optimized tools for group-indexing operations:
|
||||
aggregated sum and more.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-plotnine
|
||||
(package
|
||||
(name "python-plotnine")
|
||||
|
|
@ -4142,23 +4216,6 @@ out of the scope of the main traitlets project but are a common requirement to
|
|||
build applications with traitlets in combination with the scipy stack.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-aplus
|
||||
(package
|
||||
(name "python-aplus")
|
||||
(version "0.11.0")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "aplus" version))
|
||||
(sha256
|
||||
(base32 "1rznc26nlp641rn8gpdngfp79a3fji38yavqakxi35mx2da04msg"))))
|
||||
(build-system python-build-system)
|
||||
(home-page "https://github.com/xogeny/aplus")
|
||||
(synopsis "Promises/A+ for Python")
|
||||
(description "This package is an implementation of the Promises/A+
|
||||
specification and test suite in Python.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-clarabel
|
||||
(package
|
||||
(name "python-clarabel")
|
||||
|
|
@ -4236,63 +4293,6 @@ heavily biased to machine learning scenarios. It works on top of
|
|||
@command{numpy} and (partially) @command{gnumpy}.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-corner
|
||||
(package
|
||||
(name "python-corner")
|
||||
(version "2.2.2")
|
||||
(source
|
||||
(origin
|
||||
(method git-fetch) ;no tests in PyPi archive
|
||||
(uri (git-reference
|
||||
(url "https://github.com/dfm/corner.py")
|
||||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32 "1i4dk4jxh0saysya2cnsfwlxwpldbdl174i9pwi4qj82av9jr2ii"))))
|
||||
(build-system pyproject-build-system)
|
||||
(arguments
|
||||
(list
|
||||
#:test-flags
|
||||
#~(list
|
||||
;; XXX: Disable tests which failed with mismatched images, check why.
|
||||
"-k" (string-append "not test_labels[png]"
|
||||
" and not test_title_quantiles[png]"
|
||||
" and not test_title_quantiles_default[png]"
|
||||
" and not test_title_quantiles_raises[png]"
|
||||
" and not test_bins[png]"
|
||||
" and not test_bins_log[png]"
|
||||
" and not test_titles1[png]"
|
||||
" and not test_titles2[png]"
|
||||
" and not test_pandas[png]"
|
||||
" and not test_tight[png]"
|
||||
" and not test_extended_overplotting[png]"
|
||||
" and not test_reverse_overplotting[png]"
|
||||
" and not test_arviz[png]"
|
||||
" and not test_range_fig_arg[png]"))
|
||||
#:phases
|
||||
#~(modify-phases %standard-phases
|
||||
(add-before 'build 'pretend-version
|
||||
;; XXX: Make sure you're either building from a fully intact git
|
||||
;; repository or PyPI tarballs. Most other sources (such as GitHub's
|
||||
;; tarballs, a git checkout without the .git folder) don't contain
|
||||
;; the necessary metadata and will not work.
|
||||
(lambda _
|
||||
(setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version))))))
|
||||
(propagated-inputs
|
||||
(list python-matplotlib))
|
||||
(native-inputs
|
||||
(list python-arviz python-pytest python-scipy python-setuptools-scm))
|
||||
(home-page "http://corner.readthedocs.io/")
|
||||
(synopsis "Make some beautiful corner plots")
|
||||
(description
|
||||
"This Python module uses @code{matplotlib} to visualize multidimensional
|
||||
samples using a scatterplot matrix. In these visualizations, each one- and
|
||||
two-dimensional projection of the sample is plotted to reveal covariances.
|
||||
corner was originally conceived to display the results of Markov Chain Monte
|
||||
Carlo simulations and the defaults are chosen with this application in mind but
|
||||
it can be used for displaying many qualitatively different samples.")
|
||||
(license license:bsd-2)))
|
||||
|
||||
(define-public python-paramz
|
||||
(package
|
||||
(name "python-paramz")
|
||||
|
|
|
|||
Loading…
Add table
Add a link
Reference in a new issue