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gnu: r-cner: Add test inputs.
* gnu/packages/bioconductor.scm (r-cner)[arguments]: Add phase 'disable-bad-tests. [native-inputs]: Add r-bsgenome-drerio-ucsc-danrer10 and r-bsgenome-hsapiens-ucsc-hg38. Change-Id: I61f28337a3b7f36e8163fe7ce66cd7d31fbfc77b
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1 changed files with 20 additions and 2 deletions
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@ -24828,7 +24828,22 @@ decompression of raw bead-level data from the Illumina BeadArray platform.")
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(uri (bioconductor-uri "CNEr" version))
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(sha256
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(base32 "0f4hbg5vprsygpd3d79vrvz2d35rbicv5wgllnk5cyvyrgsp15c7"))))
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(properties `((upstream-name . "CNEr")))
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(properties
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'((upstream-name . "CNEr")
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(updater-extra-native-inputs
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. ("r-bsgenome-drerio-ucsc-danrer10"
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"r-bsgenome-hsapiens-ucsc-hg38"))))
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(arguments
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(list
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#:phases
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'(modify-phases %standard-phases
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(add-after 'unpack 'disable-bad-tests
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(lambda _
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;; These require Internet access to download data from UCSC.
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(delete-file "tests/testthat/test_Axt.R")
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(substitute* "tests/testthat/test_CNE.R"
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((".*test_CNE.*" m)
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(string-append m "skip('guix')\n"))))))))
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(build-system r-build-system)
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(inputs (list zlib))
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(propagated-inputs
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@ -24853,7 +24868,10 @@ decompression of raw bead-level data from the Illumina BeadArray platform.")
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r-s4vectors
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r-xvector))
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(native-inputs
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(list r-knitr r-testthat))
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(list r-bsgenome-drerio-ucsc-danrer10
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r-bsgenome-hsapiens-ucsc-hg38
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r-knitr
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r-testthat))
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(home-page "https://github.com/ge11232002/CNEr")
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(synopsis "CNE Detection and Visualization")
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(description
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