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gnu: pigx-bsseq: Remove dependency on pandoc-citeproc.

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* gnu/packages/patches/pigx-bsseq-no-citeproc.patch: Add patch.
* gnu/local.mk: Register it.
* gnu/packages/bioinformatics.scm (pigx-bsseq)[source]: Use it.
[native-inputs]: Add automake/autoconf.
This commit is contained in:
Lars-Dominik Braun 2021-10-05 15:42:38 +02:00
parent ff5fea3dfe
commit fb1ffc53ba
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3 changed files with 42 additions and 2 deletions
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gnu/packages/bioinformatics.scm
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@ -10644,7 +10644,8 @@ in an easily configurable manner.")
"/pigx_bsseq-" version ".tar.gz"))
(sha256
(base32
"05al5dacfp1vf1x3cq20jhd6w4xj5vaxslzaka6yrpg0av8sh3k3"))))
"05al5dacfp1vf1x3cq20jhd6w4xj5vaxslzaka6yrpg0av8sh3k3"))
(patches (search-patches "pigx-bsseq-no-citeproc.patch"))))
(build-system gnu-build-system)
(arguments
`(;; TODO: tests currently require 12+GB of RAM. See
@ -10652,6 +10653,9 @@ in an easily configurable manner.")
#:tests? #f
#:phases
(modify-phases %standard-phases
(add-before 'bootstrap 'autoreconf
(lambda _
(invoke "autoreconf" "-vif")))
(add-before 'check 'set-timezone
;; The readr package is picky about timezones.
(lambda* (#:key inputs #:allow-other-keys)
@ -10660,7 +10664,9 @@ in an easily configurable manner.")
(string-append (assoc-ref inputs "tzdata")
"/share/zoneinfo")))))))
(native-inputs
`(("tzdata" ,tzdata)))
`(("tzdata" ,tzdata)
("automake" ,automake)
("autoconf" ,autoconf)))
(inputs
`(("coreutils" ,coreutils)
("sed" ,sed)