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gnu: packages/astronomy: Sort.
* gnu/packages/astronomy.scm::(python-jplephem, python-pint-pulsar, python-pysat, and python-sep-pjw): Sort variables alphabetically. Change-Id: I22d3ecd9c6e7ecb91c6a98b1608c2715ba828e75
This commit is contained in:
Sharlatan Hellseher
parent
e3f2f81f12
commit
fd67cb90c3
1 changed files with 246 additions and 246 deletions
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@ -4573,6 +4573,40 @@ observationally-derived galaxy merger catalogs.")
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satellite.")
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satellite.")
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(license license:bsd-3)))
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(license license:bsd-3)))
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(define-public python-jplephem
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(package
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(name "python-jplephem")
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(version "2.22")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "jplephem" version))
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(sha256
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(base32 "0b2rgb7pvwnl72pqjryf9c812mmdxr69fwiym7mnz05l2xrcr6hd"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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#:phases
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#~(modify-phases %standard-phases
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(replace 'check
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(lambda* (#:key tests? #:allow-other-keys)
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(when tests?
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(invoke "python" "-m" "unittest" "discover" "-s" "test")))))))
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(native-inputs
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(list python-setuptools
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python-wheel))
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(propagated-inputs
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(list python-numpy))
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(home-page "https://github.com/brandon-rhodes/python-jplephem")
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(synopsis "Python version of NASA DE4xx ephemerides")
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(description
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"@code{skyfield} computes positions for the stars, planets, and
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satellites in orbit around the Earth. Its results should agree with the
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positions generated by the United States Naval Observatory and their
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Astronomical Almanac to within 0.0005 arcseconds (half a @emph{mas} or
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milliarcsecond).")
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(license license:expat)))
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(define-public python-jwst
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(define-public python-jwst
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(package
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(package
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(name "python-jwst")
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(name "python-jwst")
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@ -5325,6 +5359,131 @@ profiles. In particular, PetroFit includes tools for performing accurate
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photometry, segmentations, Petrosian profiling, and Sérsic fitting.")
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photometry, segmentations, Petrosian profiling, and Sérsic fitting.")
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(license license:bsd-3)))
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(license license:bsd-3)))
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(define-public python-pint-pulsar
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(package
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(name "python-pint-pulsar")
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(version "1.1.3")
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(source
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(origin
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(method git-fetch) ; no tests data in the PyPI tarball
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(uri (git-reference
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(url "https://github.com/nanograv/PINT")
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(commit version)))
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(file-name (git-file-name name version))
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(sha256
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(base32 "0n66z7v30q1981hx4q5vy3mibrh453gak8dd938038r5mwddya3f"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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#:test-flags
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#~(list "-k" (string-join
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;; Tests failing with assertion on not correct precision
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;; or missing data files.
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(list "not test_astropy_observatory"
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"test_copy_wideband_fitter_object"
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"test_IERS_B_builtin_agree_with_IERS_Auto_dX"
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"test_astropy_observatory"
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"test_time_construction_jds_exact[tdb]"
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"test_copy_toa_object"
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"test_copy_residuals"
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"test_copy_fitter_object")
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" and not ")
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;; XXX: The most of the tests require additional data, select
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;; files where they may run without it and check how to enable
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;; more.
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"tests/test_Galactic.py"
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"tests/test_all_component_and_model_builder.py"
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"tests/test_astrometry.py"
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"tests/test_astropy_observatory.py"
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"tests/test_astropy_times.py"
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"tests/test_astropy_version.py"
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"tests/test_binary_generic.py"
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"tests/test_binconvert.py"
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"tests/test_compare.py"
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"tests/test_compare_model.py"
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"tests/test_compare_model_ecl_vs_icrs.py"
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"tests/test_convert_parfile.py"
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"tests/test_copy.py"
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"tests/test_covariance_matrix.py"
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"tests/test_datafiles.py"
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"tests/test_derived_quantities.py"
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"tests/test_derivedparams.py"
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"tests/test_dmxrange_add_sub.py"
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"tests/test_erfautils.py"
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"tests/test_eventstats.py"
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"tests/test_funcpar.py"
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"tests/test_kepler.py"
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"tests/test_leapsec.py"
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"tests/test_model_manual.py"
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"tests/test_numpy.py"
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"tests/test_observatory_envar.py"
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"tests/test_observatory_metadata.py"
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"tests/test_parfile.py"
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"tests/test_parunits.py"
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"tests/test_pb.py"
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"tests/test_phase.py"
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"tests/test_pickle.py"
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"tests/test_plk_widget.py"
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"tests/test_plot_utils.py"
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"tests/test_plrednoise.py"
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"tests/test_pmtransform_units.py"
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"tests/test_precision.py"
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"tests/test_prefix_param_inheritance.py"
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"tests/test_priors.py"
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"tests/test_process_parfile.py"
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"tests/test_pulsar_mjd.py"
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"tests/test_pulsar_position.py"
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"tests/test_reduced_precision.py"
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"tests/test_satobs.py"
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"tests/test_t2binary2pint.py"
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"tests/test_tcb2tdb.py"
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"tests/test_templates.py"
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"tests/test_variety_parfiles.py"
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"tests/test_version.py")
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#:phases
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#~(modify-phases %standard-phases
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(add-after 'unpack 'remove-deprecated-scripts
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;; ImportError: cannot import name 'CompositeMCMCFitter' from
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;; 'pint.mcmc_fitter'.
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;;
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;; Removed in 1.1.3: Broken fitter class `CompositeMCMCFitter`
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;; (this fitter was added seemingly to deal with combined radio and
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;; high-energy datasets, but has since been broken for a while.)
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(lambda _
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(substitute* "pyproject.toml"
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(("event_optimize_multiple.*") "")))))))
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(native-inputs
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(list python-pytest
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python-setuptools
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python-versioneer
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python-wheel))
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(propagated-inputs
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(list python-astropy
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python-corner
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python-emcee
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python-jplephem
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python-loguru
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python-matplotlib
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python-nestle
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python-numdifftools
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python-numpy
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python-pyerfa
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python-scipy
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python-uncertainties))
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(home-page "https://github.com/nanograv/PINT")
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(synopsis "Software for high-precision pulsar timing")
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(description
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"PINT is not TEMPO3 - package providing a Pulsar Timing, written in
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Python from scratch.
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Features:
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@itemize
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@item a robust system to produce high-precision timing results that is
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completely independent of TEMPO and Tempo2
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@item a system that is easy to extend and modify due to a good design
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and the use of a modern programming language, techniques, and libraries
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@end itemize")
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(license license:bsd-3)))
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(define-public python-pixell
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(define-public python-pixell
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(package
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(package
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(name "python-pixell")
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(name "python-pixell")
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@ -5588,6 +5747,63 @@ Features:
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@end itemize")
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@end itemize")
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(license license:expat)))
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(license license:expat)))
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(define-public python-pysat
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(package
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(name "python-pysat")
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(version "3.2.2")
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(source
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(origin
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(method git-fetch) ; no tests data in the PyPI tarball
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(uri (git-reference
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(url "https://github.com/pysat/pysat")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32 "0gm71zafigwc94s37wqyl86yjabpq6wx9izwxag74wg1ynhqyvf0"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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#:test-flags
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#~(list "--durations=10" ; report 10 slowest tests
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;; Tests require pysatSpaceWeather which is not packed yet.
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"--ignore=pysat/tests/test_utils_files.py"
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"-k" "not test_from_os")
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#:phases
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#~(modify-phases %standard-phases
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(add-before 'check 'pre-check
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(lambda _
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;; Do not run test coverage.
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(substitute* "pyproject.toml"
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((".*addopts.*cov.*") ""))
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;; No such file or directory: '/homeless-shelter/.pysat'
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(setenv "HOME" "/tmp")
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(mkdir "pysatData")
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(invoke "python" "-c"
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"import pysat; pysat.params['data_dirs'] = 'pysatData'"))))))
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(native-inputs
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(list python-pytest
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python-pytest-xdist
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|
python-setuptools
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python-wheel))
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|
(propagated-inputs
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|
(list python-dask
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|
python-netcdf4
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|
python-numpy
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|
python-pandas
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python-portalocker
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python-scipy
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|
python-toolz
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python-xarray))
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(home-page "https://github.com/pysat/pysat")
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(synopsis "Supports science analysis across disparate data platforms")
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(description
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"The Python Satellite Data Analysis Toolkit (pysat) provides a simple and
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flexible interface for robust data analysis from beginning to end - including
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downloading, loading, cleaning, managing, processing, and analyzing
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data. Pysat's plug-in design allows analysis support for any data, including
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user provided data sets.")
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(license license:bsd-3)))
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(define-public python-pysiril
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(define-public python-pysiril
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(package
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(package
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(name "python-pysiril")
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(name "python-pysiril")
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@ -5954,6 +6170,36 @@ observations from the Nancy Grace Roman Space Telescope.")
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(list python-numpy))
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(list python-numpy))
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(synopsis "Python library for Source Extraction and Photometry")))
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(synopsis "Python library for Source Extraction and Photometry")))
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(define-public python-sep-pjw
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(package
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(name "python-sep-pjw")
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(version "1.3.8")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "sep_pjw" version))
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(sha256
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(base32 "0lhxfq1acc6qc8nszfdrpwq6dizaypz3b6frknfv5qm59mb488r0"))))
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|
(build-system pyproject-build-system)
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|
(arguments
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|
(list
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|
#:test-flags #~(list "test.py")))
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|
(native-inputs
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|
(list python-cython
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|
python-pytest
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|
python-setuptools
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|
python-setuptools-scm-next
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|
python-wheel))
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|
(propagated-inputs
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|
(list python-numpy
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|
python-sep))
|
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|
(home-page "https://github.com/PJ-Watson/sep-pjw")
|
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|
(synopsis "Alternative fork of SEP library")
|
||||||
|
(description
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|
"This package provides an alternative maintained fork of SEP python
|
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|
library with bug fixtures.")
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|
(license (list license:expat license:lgpl3+ license:bsd-3))))
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|
|
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(define-public python-sirilic
|
(define-public python-sirilic
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(package
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(package
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(name "python-sirilic")
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(name "python-sirilic")
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@ -6391,40 +6637,6 @@ instruments.")
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(license (list license:bsd-3 ; licenses/LICENSE.rst, same as python-astropy
|
(license (list license:bsd-3 ; licenses/LICENSE.rst, same as python-astropy
|
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license:expat)))) ; licenses/KOSMOS_LICENSE
|
license:expat)))) ; licenses/KOSMOS_LICENSE
|
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|
|
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(define-public python-jplephem
|
|
||||||
(package
|
|
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(name "python-jplephem")
|
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(version "2.22")
|
|
||||||
(source
|
|
||||||
(origin
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(method url-fetch)
|
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||||||
(uri (pypi-uri "jplephem" version))
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||||||
(sha256
|
|
||||||
(base32 "0b2rgb7pvwnl72pqjryf9c812mmdxr69fwiym7mnz05l2xrcr6hd"))))
|
|
||||||
(build-system pyproject-build-system)
|
|
||||||
(arguments
|
|
||||||
(list
|
|
||||||
#:phases
|
|
||||||
#~(modify-phases %standard-phases
|
|
||||||
(replace 'check
|
|
||||||
(lambda* (#:key tests? #:allow-other-keys)
|
|
||||||
(when tests?
|
|
||||||
(invoke "python" "-m" "unittest" "discover" "-s" "test")))))))
|
|
||||||
(native-inputs
|
|
||||||
(list python-setuptools
|
|
||||||
python-wheel))
|
|
||||||
(propagated-inputs
|
|
||||||
(list python-numpy))
|
|
||||||
(home-page "https://github.com/brandon-rhodes/python-jplephem")
|
|
||||||
(synopsis "Python version of NASA DE4xx ephemerides")
|
|
||||||
(description
|
|
||||||
"@code{skyfield} computes positions for the stars, planets, and
|
|
||||||
satellites in orbit around the Earth. Its results should agree with the
|
|
||||||
positions generated by the United States Naval Observatory and their
|
|
||||||
Astronomical Almanac to within 0.0005 arcseconds (half a @emph{mas} or
|
|
||||||
milliarcsecond).")
|
|
||||||
(license license:expat)))
|
|
||||||
|
|
||||||
(define-public python-photutils
|
(define-public python-photutils
|
||||||
(package
|
(package
|
||||||
(name "python-photutils")
|
(name "python-photutils")
|
||||||
|
|
@ -7393,63 +7605,6 @@ astrophysical simulations supporting PKDGRAV/Gasoline, Gadget, Gadget4/Arepo,
|
||||||
N-Chilada and RAMSES AMR outputs.")
|
N-Chilada and RAMSES AMR outputs.")
|
||||||
(license license:gpl3+)))
|
(license license:gpl3+)))
|
||||||
|
|
||||||
(define-public python-pysat
|
|
||||||
(package
|
|
||||||
(name "python-pysat")
|
|
||||||
(version "3.2.2")
|
|
||||||
(source
|
|
||||||
(origin
|
|
||||||
(method git-fetch) ; no tests data in the PyPI tarball
|
|
||||||
(uri (git-reference
|
|
||||||
(url "https://github.com/pysat/pysat")
|
|
||||||
(commit (string-append "v" version))))
|
|
||||||
(file-name (git-file-name name version))
|
|
||||||
(sha256
|
|
||||||
(base32 "0gm71zafigwc94s37wqyl86yjabpq6wx9izwxag74wg1ynhqyvf0"))))
|
|
||||||
(build-system pyproject-build-system)
|
|
||||||
(arguments
|
|
||||||
(list
|
|
||||||
#:test-flags
|
|
||||||
#~(list "--durations=10" ; report 10 slowest tests
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|
||||||
;; Tests require pysatSpaceWeather which is not packed yet.
|
|
||||||
"--ignore=pysat/tests/test_utils_files.py"
|
|
||||||
"-k" "not test_from_os")
|
|
||||||
#:phases
|
|
||||||
#~(modify-phases %standard-phases
|
|
||||||
(add-before 'check 'pre-check
|
|
||||||
(lambda _
|
|
||||||
;; Do not run test coverage.
|
|
||||||
(substitute* "pyproject.toml"
|
|
||||||
((".*addopts.*cov.*") ""))
|
|
||||||
;; No such file or directory: '/homeless-shelter/.pysat'
|
|
||||||
(setenv "HOME" "/tmp")
|
|
||||||
(mkdir "pysatData")
|
|
||||||
(invoke "python" "-c"
|
|
||||||
"import pysat; pysat.params['data_dirs'] = 'pysatData'"))))))
|
|
||||||
(native-inputs
|
|
||||||
(list python-pytest
|
|
||||||
python-pytest-xdist
|
|
||||||
python-setuptools
|
|
||||||
python-wheel))
|
|
||||||
(propagated-inputs
|
|
||||||
(list python-dask
|
|
||||||
python-netcdf4
|
|
||||||
python-numpy
|
|
||||||
python-pandas
|
|
||||||
python-portalocker
|
|
||||||
python-scipy
|
|
||||||
python-toolz
|
|
||||||
python-xarray))
|
|
||||||
(home-page "https://github.com/pysat/pysat")
|
|
||||||
(synopsis "Supports science analysis across disparate data platforms")
|
|
||||||
(description
|
|
||||||
"The Python Satellite Data Analysis Toolkit (pysat) provides a simple and
|
|
||||||
flexible interface for robust data analysis from beginning to end - including
|
|
||||||
downloading, loading, cleaning, managing, processing, and analyzing
|
|
||||||
data. Pysat's plug-in design allows analysis support for any data, including
|
|
||||||
user provided data sets.")
|
|
||||||
(license license:bsd-3)))
|
|
||||||
|
|
||||||
(define-public python-pysiaf
|
(define-public python-pysiaf
|
||||||
(package
|
(package
|
||||||
(name "python-pysiaf")
|
(name "python-pysiaf")
|
||||||
|
|
@ -7607,36 +7762,6 @@ well as ephemerides services
|
||||||
@end itemize")
|
@end itemize")
|
||||||
(license license:bsd-3)))
|
(license license:bsd-3)))
|
||||||
|
|
||||||
(define-public python-sep-pjw
|
|
||||||
(package
|
|
||||||
(name "python-sep-pjw")
|
|
||||||
(version "1.3.8")
|
|
||||||
(source
|
|
||||||
(origin
|
|
||||||
(method url-fetch)
|
|
||||||
(uri (pypi-uri "sep_pjw" version))
|
|
||||||
(sha256
|
|
||||||
(base32 "0lhxfq1acc6qc8nszfdrpwq6dizaypz3b6frknfv5qm59mb488r0"))))
|
|
||||||
(build-system pyproject-build-system)
|
|
||||||
(arguments
|
|
||||||
(list
|
|
||||||
#:test-flags #~(list "test.py")))
|
|
||||||
(native-inputs
|
|
||||||
(list python-cython
|
|
||||||
python-pytest
|
|
||||||
python-setuptools
|
|
||||||
python-setuptools-scm-next
|
|
||||||
python-wheel))
|
|
||||||
(propagated-inputs
|
|
||||||
(list python-numpy
|
|
||||||
python-sep))
|
|
||||||
(home-page "https://github.com/PJ-Watson/sep-pjw")
|
|
||||||
(synopsis "Alternative fork of SEP library")
|
|
||||||
(description
|
|
||||||
"This package provides an alternative maintained fork of SEP python
|
|
||||||
library with bug fixtures.")
|
|
||||||
(license (list license:expat license:lgpl3+ license:bsd-3))))
|
|
||||||
|
|
||||||
(define-public python-asdf-standard
|
(define-public python-asdf-standard
|
||||||
(package
|
(package
|
||||||
(name "python-asdf-standard")
|
(name "python-asdf-standard")
|
||||||
|
|
@ -7779,131 +7904,6 @@ System (WCS) tags. Users should not need to install this directly; instead,
|
||||||
install an implementation package such as gwcs.")
|
install an implementation package such as gwcs.")
|
||||||
(license license:bsd-3))))
|
(license license:bsd-3))))
|
||||||
|
|
||||||
(define-public python-pint-pulsar
|
|
||||||
(package
|
|
||||||
(name "python-pint-pulsar")
|
|
||||||
(version "1.1.3")
|
|
||||||
(source
|
|
||||||
(origin
|
|
||||||
(method git-fetch) ; no tests data in the PyPI tarball
|
|
||||||
(uri (git-reference
|
|
||||||
(url "https://github.com/nanograv/PINT")
|
|
||||||
(commit version)))
|
|
||||||
(file-name (git-file-name name version))
|
|
||||||
(sha256
|
|
||||||
(base32 "0n66z7v30q1981hx4q5vy3mibrh453gak8dd938038r5mwddya3f"))))
|
|
||||||
(build-system pyproject-build-system)
|
|
||||||
(arguments
|
|
||||||
(list
|
|
||||||
#:test-flags
|
|
||||||
#~(list "-k" (string-join
|
|
||||||
;; Tests failing with assertion on not correct precision
|
|
||||||
;; or missing data files.
|
|
||||||
(list "not test_astropy_observatory"
|
|
||||||
"test_copy_wideband_fitter_object"
|
|
||||||
"test_IERS_B_builtin_agree_with_IERS_Auto_dX"
|
|
||||||
"test_astropy_observatory"
|
|
||||||
"test_time_construction_jds_exact[tdb]"
|
|
||||||
"test_copy_toa_object"
|
|
||||||
"test_copy_residuals"
|
|
||||||
"test_copy_fitter_object")
|
|
||||||
" and not ")
|
|
||||||
;; XXX: The most of the tests require additional data, select
|
|
||||||
;; files where they may run without it and check how to enable
|
|
||||||
;; more.
|
|
||||||
"tests/test_Galactic.py"
|
|
||||||
"tests/test_all_component_and_model_builder.py"
|
|
||||||
"tests/test_astrometry.py"
|
|
||||||
"tests/test_astropy_observatory.py"
|
|
||||||
"tests/test_astropy_times.py"
|
|
||||||
"tests/test_astropy_version.py"
|
|
||||||
"tests/test_binary_generic.py"
|
|
||||||
"tests/test_binconvert.py"
|
|
||||||
"tests/test_compare.py"
|
|
||||||
"tests/test_compare_model.py"
|
|
||||||
"tests/test_compare_model_ecl_vs_icrs.py"
|
|
||||||
"tests/test_convert_parfile.py"
|
|
||||||
"tests/test_copy.py"
|
|
||||||
"tests/test_covariance_matrix.py"
|
|
||||||
"tests/test_datafiles.py"
|
|
||||||
"tests/test_derived_quantities.py"
|
|
||||||
"tests/test_derivedparams.py"
|
|
||||||
"tests/test_dmxrange_add_sub.py"
|
|
||||||
"tests/test_erfautils.py"
|
|
||||||
"tests/test_eventstats.py"
|
|
||||||
"tests/test_funcpar.py"
|
|
||||||
"tests/test_kepler.py"
|
|
||||||
"tests/test_leapsec.py"
|
|
||||||
"tests/test_model_manual.py"
|
|
||||||
"tests/test_numpy.py"
|
|
||||||
"tests/test_observatory_envar.py"
|
|
||||||
"tests/test_observatory_metadata.py"
|
|
||||||
"tests/test_parfile.py"
|
|
||||||
"tests/test_parunits.py"
|
|
||||||
"tests/test_pb.py"
|
|
||||||
"tests/test_phase.py"
|
|
||||||
"tests/test_pickle.py"
|
|
||||||
"tests/test_plk_widget.py"
|
|
||||||
"tests/test_plot_utils.py"
|
|
||||||
"tests/test_plrednoise.py"
|
|
||||||
"tests/test_pmtransform_units.py"
|
|
||||||
"tests/test_precision.py"
|
|
||||||
"tests/test_prefix_param_inheritance.py"
|
|
||||||
"tests/test_priors.py"
|
|
||||||
"tests/test_process_parfile.py"
|
|
||||||
"tests/test_pulsar_mjd.py"
|
|
||||||
"tests/test_pulsar_position.py"
|
|
||||||
"tests/test_reduced_precision.py"
|
|
||||||
"tests/test_satobs.py"
|
|
||||||
"tests/test_t2binary2pint.py"
|
|
||||||
"tests/test_tcb2tdb.py"
|
|
||||||
"tests/test_templates.py"
|
|
||||||
"tests/test_variety_parfiles.py"
|
|
||||||
"tests/test_version.py")
|
|
||||||
#:phases
|
|
||||||
#~(modify-phases %standard-phases
|
|
||||||
(add-after 'unpack 'remove-deprecated-scripts
|
|
||||||
;; ImportError: cannot import name 'CompositeMCMCFitter' from
|
|
||||||
;; 'pint.mcmc_fitter'.
|
|
||||||
;;
|
|
||||||
;; Removed in 1.1.3: Broken fitter class `CompositeMCMCFitter`
|
|
||||||
;; (this fitter was added seemingly to deal with combined radio and
|
|
||||||
;; high-energy datasets, but has since been broken for a while.)
|
|
||||||
(lambda _
|
|
||||||
(substitute* "pyproject.toml"
|
|
||||||
(("event_optimize_multiple.*") "")))))))
|
|
||||||
(native-inputs
|
|
||||||
(list python-pytest
|
|
||||||
python-setuptools
|
|
||||||
python-versioneer
|
|
||||||
python-wheel))
|
|
||||||
(propagated-inputs
|
|
||||||
(list python-astropy
|
|
||||||
python-corner
|
|
||||||
python-emcee
|
|
||||||
python-jplephem
|
|
||||||
python-loguru
|
|
||||||
python-matplotlib
|
|
||||||
python-nestle
|
|
||||||
python-numdifftools
|
|
||||||
python-numpy
|
|
||||||
python-pyerfa
|
|
||||||
python-scipy
|
|
||||||
python-uncertainties))
|
|
||||||
(home-page "https://github.com/nanograv/PINT")
|
|
||||||
(synopsis "Software for high-precision pulsar timing")
|
|
||||||
(description
|
|
||||||
"PINT is not TEMPO3 - package providing a Pulsar Timing, written in
|
|
||||||
Python from scratch.
|
|
||||||
Features:
|
|
||||||
@itemize
|
|
||||||
@item a robust system to produce high-precision timing results that is
|
|
||||||
completely independent of TEMPO and Tempo2
|
|
||||||
@item a system that is easy to extend and modify due to a good design
|
|
||||||
and the use of a modern programming language, techniques, and libraries
|
|
||||||
@end itemize")
|
|
||||||
(license license:bsd-3)))
|
|
||||||
|
|
||||||
(define-public python-rad
|
(define-public python-rad
|
||||||
(package
|
(package
|
||||||
(name "python-rad")
|
(name "python-rad")
|
||||||
|
|
|
||||||
Loading…
Add table
Add a link
Reference in a new issue