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gnu: python-pytorch-geometric: Update to commit 85cf9fc.

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Fixes guix/guix#1043.

* gnu/packages/machine-learning.scm (python-pytorch-geometric): Update to
commit 85cf9fc.
[arguments]: Fix the 'delete-top-level-directories phase.
[propagated-inputs]: Add python-xxhash.

Signed-off-by: Andreas Enge <andreas@enge.fr>
This commit is contained in:
David Elsing 2025-07-11 20:54:39 +02:00 • committed by Andreas Enge
parent baba8a4370
commit fd8e1f3e65
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1 changed files with 88 additions and 84 deletions
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18
gnu/packages/machine-learning.scm
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@ -89,6 +89,7 @@
#:use-module (gnu packages curl) #:use-module (gnu packages curl)
#:use-module (gnu packages databases) #:use-module (gnu packages databases)
#:use-module (gnu packages dejagnu) #:use-module (gnu packages dejagnu)
#:use-module (gnu packages digest)
#:use-module (gnu packages documentation) #:use-module (gnu packages documentation)
#:use-module (gnu packages freedesktop) #:use-module (gnu packages freedesktop)
#:use-module (gnu packages gcc) #:use-module (gnu packages gcc)
@ -5461,18 +5462,20 @@ Note: currently this package does not provide GPU support.")
python-sympy))))) python-sympy)))))
(define-public python-pytorch-geometric (define-public python-pytorch-geometric
(let ((commit "85cf9fc12b1138c1f2adbed8a761356c3f4197e7")
(revision "0"))
(package (package
(name "python-pytorch-geometric") (name "python-pytorch-geometric")
(version "2.6.1") (version (git-version "2.6.1" revision commit))
(source (origin (source (origin
(method git-fetch) (method git-fetch)
(uri (git-reference (uri (git-reference
(url "https://github.com/pyg-team/pytorch_geometric/") (url "https://github.com/pyg-team/pytorch_geometric/")
(commit version))) (commit commit)))
(file-name (git-file-name name version)) (file-name (git-file-name name version))
(sha256 (sha256
(base32 (base32
"0dbxz9d22vzm7fr9kgg66hj3sf8ag2ly8qky58cxvn1hyjl5h3v7")))) "104v3w9yv7akyxpyd8aq85mw1mncql8mvr1p1b34ph09csqh68hq"))))
(build-system pyproject-build-system) (build-system pyproject-build-system)
(arguments (arguments
(list (list
@ -5509,7 +5512,7 @@ Note: currently this package does not provide GPU support.")
;; The presence of these directories confuses the pyproject build ;; The presence of these directories confuses the pyproject build
;; system. ;; system.
(for-each delete-file-recursively (for-each delete-file-recursively
'("conda" "docker" "graphgym"))))))) '("docker" "graphgym")))))))
(propagated-inputs (propagated-inputs
(list onnx (list onnx
python-captum python-captum
@ -5535,9 +5538,10 @@ Note: currently this package does not provide GPU support.")
python-sympy python-sympy
python-tabulate python-tabulate
python-torchmetrics python-torchmetrics
python-tqdm)) python-tqdm
python-xxhash))
(native-inputs (native-inputs
(list python-flit-core (list python-flit-core-next
python-pytest python-pytest
python-pytest-cov)) python-pytest-cov))
(home-page "https://pyg.org") (home-page "https://pyg.org")
@ -5545,7 +5549,7 @@ Note: currently this package does not provide GPU support.")
(description (description
"PyG is a library built upon PyTorch to easily write and train Graph "PyG is a library built upon PyTorch to easily write and train Graph
Neural Networks for a wide range of applications related to structured data.") Neural Networks for a wide range of applications related to structured data.")
(license license:expat))) (license license:expat))))
(define-public python-lightning-cloud (define-public python-lightning-cloud
(package (package