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gnu: Add r-damefinder.
* gnu/packages/bioconductor.scm (r-damefinder): New variable.
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@ -3036,6 +3036,47 @@ two-colour microarray experiments and for the statistical analysis of
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factorial microarray data.")
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factorial microarray data.")
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(license license:gpl2+)))
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(license license:gpl2+)))
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(define-public r-damefinder
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(package
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(name "r-damefinder")
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(version "1.8.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "DAMEfinder" version))
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(sha256
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(base32
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"123ra94bij0m45j2fzqr7fjipj4ld9kgk0kir1zfdbbd5h8h4mdf"))))
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(properties `((upstream-name . "DAMEfinder")))
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(build-system r-build-system)
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(propagated-inputs
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(list r-biocgenerics
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r-biostrings
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r-bumphunter
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r-cowplot
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r-genomeinfodb
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r-genomicalignments
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r-genomicranges
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r-ggplot2
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r-iranges
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r-limma
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r-plyr
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r-readr
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r-reshape2
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r-rsamtools
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r-s4vectors
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r-stringr
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r-summarizedexperiment
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r-variantannotation))
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(native-inputs (list r-knitr))
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(home-page "https://bioconductor.org/packages/DAMEfinder")
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(synopsis "Differential allelicly methylated regions")
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(description
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"This package offers functionality for taking methtuple or Bismark
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outputs to calculate @acronym{ASM, Allele-Specific Methylation} scores and
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compute @acronym{DAMEs, Differential Allelicly MEthylated} regions. It also
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offers nice visualization of methyl-circle plots.")
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(license license:expat)))
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(define-public r-dearseq
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(define-public r-dearseq
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(package
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(package
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(name "r-dearseq")
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(name "r-dearseq")
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