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gnu: python-plotly: Move to python-science.

Browse source 
This package is not related to Graph at all and imported by
bioinformatics and astronomy modules only which are Science disciplines.
This change moves it closer to related packages and preserves copyright
header records extracted from git log.

* gnu/packages/graph.scm (python-plotly): Move from here ...
* gnu/packages/python-science.scm: ... to here.

Change-Id: I5544ebdf1f545b2d7740dd56cab2d04bbe9d7715
This commit is contained in:
Sharlatan Hellseher 2025-07-05 22:56:13 +01:00
parent 502b3d9dd6
commit fe3159ce7a
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GPG key ID: 76D727BFF62CD2B5
2 changed files with 109 additions and 105 deletions
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101
gnu/packages/graph.scm
View file

@ -303,107 +303,6 @@ represented by horizontal lines, and edges are represented by vertical
lines.")
(license license:expat))))
(define-public python-plotly
(package
(name "python-plotly")
(version "5.20.0")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/plotly/plotly.py")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"0i22sv8p3kl84nkldbv1253kld85rbwp2pdxivxn64wwflfpqvx6"))))
(build-system pyproject-build-system)
(arguments
(list
#:test-flags
;; 2658 passed, 18 skipped, 38 deselected, 574 warnings
#~(list "-k" (string-join
;; python-polars is not packaged yet.
(list "not test_build_df_from_vaex_and_polars"
"test_build_df_with_hover_data_from_vaex_and_polars"
;; ValueError
"test_bytesio"
"test_ensure_orca_ping_and_proc"
"test_kaleido_engine_to_image_returns_bytes"
"test_kaleido_fulljson"
"test_latex_fig_to_image[eps]"
"test_mimetype_combination"
"test_orca_version_number"
"test_pdf_renderer_show_override"
"test_png_renderer_mimetype"
"test_problematic_environment_variables[eps]"
"test_server_timeout_shutdown"
"test_simple_to_image[eps]"
"test_svg_renderer_show"
"test_to_image_default[eps]"
"test_topojson_fig_to_image[eps]"
"test_validate_orca"
"test_write_image_string[eps]"
"test_write_image_string_bad_extension_override"
"test_write_image_string_format_inference[eps]"
"test_write_image_writeable[eps]"
;; XXX: check why these tests fail
"test_dependencies_not_imported"
"test_external_server_url"
"test_invalid_figure_json"
"test_lazy_imports"
"test_legend_dots"
"test_linestyle"
"test_orca_executable_path"
"test_sanitize_json[auto]"
"test_sanitize_json[json]"
"test_scraper"
"test_write_image_string_bad_extension_failure")
" and not "))
#:phases
#~(modify-phases %standard-phases
(add-before 'build 'skip-npm
;; npm is not packaged so build without it
(lambda _
(setenv "SKIP_NPM" "T")))
(add-after 'unpack 'fix-version
;; TODO: Versioneer in Guix gets its release version from the
;; parent directory, but the plotly package is located inside a
;; depth 3 subdirectory. Try to use versioneer if possible.
(lambda _
(substitute* "packages/python/plotly/setup.py"
(("version=versioneer.get_version\\(),")
(format #f "version=~s," #$version)))
(substitute* "packages/python/plotly/plotly/version.py"
(("__version__ = get_versions\\(\\)\\[\"version\"\\]")
(format #f "__version__ = ~s" #$version)))))
(add-after 'fix-version 'chdir
(lambda _
(chdir "packages/python/plotly"))))))
(native-inputs
(list python-ipywidgets
python-pytest
python-setuptools
python-wheel
python-xarray))
(propagated-inputs
(list python-ipython
python-pandas
python-pillow
;; python-polars
python-requests
python-retrying
python-scikit-image
python-statsmodels
python-tenacity
python-vaex-core))
(home-page "https://plotly.com/python/")
(synopsis "Interactive plotting library for Python")
(description "Plotly's Python graphing library makes interactive,
publication-quality graphs online. Examples of how to make line plots, scatter
plots, area charts, bar charts, error bars, box plots, histograms, heatmaps,
subplots, multiple-axes, polar charts, and bubble charts.")
(license license:expat)))
(define-public python-louvain
(package
(name "python-louvain")

113
gnu/packages/python-science.scm
View file

@ -1,11 +1,12 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015, 2016, 2020-2025 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015, 2016, 2018, 2020-2025 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015 Federico Beffa <beffa@fbengineering.ch>
;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
;;; Copyright © 2016 Hartmut Goebel <h.goebel@crazy-compilers.com>
;;; Copyright © 2016, 2022-2025 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016, 2021-2025 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016-2020, 2022 Marius Bakke <marius@gnu.org>
;;; Copyright © 2019 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2018, 2022 Leo Famulari <leo@famulari.name>
;;; Copyright © 2019, 2021, 2022, 2023, 2024 Maxim Cournoyer <maxim.cournoyer@gmail.com>
;;; Copyright © 2019 Giacomo Leidi <goodoldpaul@autistici.org>
;;; Copyright © 2020 Pierre Langlois <pierre.langlois@gmx.com>
@ -14,15 +15,17 @@
;;; Copyright © 2021 Roel Janssen <roel@gnu.org>
;;; Copyright © 2021 Paul Garlick <pgarlick@tourbillion-technology.com>
;;; Copyright © 2021 Arun Isaac <arunisaac@systemreboot.net>
;;; Copyright © 2021 Vagrant Cascadian <vagrant@debian.org>
;;; Copyright © 2021, 2023 Felix Gruber <felgru@posteo.net>
;;; Copyright © 2022 Malte Frank Gerdes <malte.f.gerdes@gmail.com>
;;; Copyright © 2021, 2022 Guillaume Le Vaillant <glv@posteo.net>
;;; Copyright © 2022 Leo Famulari <leo@famulari.name>
;;; Copyright © 2022 Paul A. Patience <paul@apatience.com>
;;; Copyright © 2022 Wiktor Żelazny <wzelazny@vurv.cz>
;;; Copyright © 2022 Eric Bavier <bavier@posteo.net>
;;; Copyright © 2022 kiasoc5 <kiasoc5@tutanota.com>
;;; Copyright © 2022, 2024 Antero Mejr <antero@mailbox.org>
;;; Copyright © 2022 jgart <jgart@dismail.de>
;;; Copyright © 2022 Sarah Morgensen <iskarian@mgsn.dev>
;;; Copyright © 2023, 2024 Troy Figiel <troy@troyfigiel.com>
;;; Copyright © 2024-2025 Sharlatan Hellseher <sharlatanus@gmail.com>
;;; Copyright © 2024 Marco Baggio <marco.baggio@mdc-berlin.de>
@ -4330,6 +4333,108 @@ and more
@end itemize")
(license license:gpl3)))
(define-public python-plotly
(package
(name "python-plotly")
(version "5.20.0")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/plotly/plotly.py")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "0i22sv8p3kl84nkldbv1253kld85rbwp2pdxivxn64wwflfpqvx6"))))
(build-system pyproject-build-system)
(arguments
(list
#:test-flags
;; 2658 passed, 18 skipped, 38 deselected, 574 warnings
#~(list "-k" (string-join
;; python-polars is not packaged yet.
(list "not test_build_df_from_vaex_and_polars"
"test_build_df_with_hover_data_from_vaex_and_polars"
;; ValueError
"test_bytesio"
"test_ensure_orca_ping_and_proc"
"test_kaleido_engine_to_image_returns_bytes"
"test_kaleido_fulljson"
"test_latex_fig_to_image[eps]"
"test_mimetype_combination"
"test_orca_version_number"
"test_pdf_renderer_show_override"
"test_png_renderer_mimetype"
"test_problematic_environment_variables[eps]"
"test_server_timeout_shutdown"
"test_simple_to_image[eps]"
"test_svg_renderer_show"
"test_to_image_default[eps]"
"test_topojson_fig_to_image[eps]"
"test_validate_orca"
"test_write_image_string[eps]"
"test_write_image_string_bad_extension_override"
"test_write_image_string_format_inference[eps]"
"test_write_image_writeable[eps]"
;; XXX: check why these tests fail
"test_dependencies_not_imported"
"test_external_server_url"
"test_invalid_figure_json"
"test_lazy_imports"
"test_legend_dots"
"test_linestyle"
"test_orca_executable_path"
"test_sanitize_json[auto]"
"test_sanitize_json[json]"
"test_scraper"
"test_write_image_string_bad_extension_failure")
" and not "))
#:phases
#~(modify-phases %standard-phases
(add-before 'build 'skip-npm
;; npm is not packaged so build without it
(lambda _
(setenv "SKIP_NPM" "T")))
(add-after 'unpack 'fix-version
;; TODO: Versioneer in Guix gets its release version from the
;; parent directory, but the plotly package is located inside a
;; depth 3 subdirectory. Try to use versioneer if possible.
(lambda _
(substitute* "packages/python/plotly/setup.py"
(("version=versioneer.get_version\\(),")
(format #f "version=~s," #$version)))
(substitute* "packages/python/plotly/plotly/version.py"
(("__version__ = get_versions\\(\\)\\[\"version\"\\]")
(format #f "__version__ = ~s" #$version)))))
(add-after 'fix-version 'chdir
(lambda _
(chdir "packages/python/plotly"))))))
(native-inputs
(list python-ipywidgets
python-pytest
python-setuptools
python-wheel
python-xarray))
(propagated-inputs
(list python-ipython
python-pandas
python-pillow
;; python-polars
python-requests
python-retrying
python-scikit-image
python-statsmodels
python-tenacity
python-vaex-core))
(home-page "https://plotly.com/python/")
(synopsis "Interactive plotting library for Python")
(description
"Plotly's Python graphing library makes interactive,publication-quality
graphs online. Examples of how to make line plots, scatter plots, area
charts, bar charts, error bars, box plots, histograms, heatmaps, subplots,
multiple-axes, polar charts, and bubble charts.")
(license license:expat)))
(define-public python-plotnine
(package
(name "python-plotnine")