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Author SHA1 Message Date
Ricardo Wurmus
5b937c4f3c
gnu: r-alabaster-sce: Add test inputs. 
* gnu/packages/bioconductor.scm (r-alabaster-sce)[native-inputs]: Add r-testthat.

Change-Id: I9592df21bee6805cabc13d6143049b5c702f9ba6
 2024-12-03 16:58:47 +01:00
Ricardo Wurmus
deb134d429
gnu: r-alabaster-ranges: Add test inputs. 
* gnu/packages/bioconductor.scm (r-alabaster-ranges)[native-inputs]: Add r-testthat.

Change-Id: I8c5404d20fb37cd51462ee347e4e607ef35576ff
 2024-12-03 16:58:47 +01:00
Ricardo Wurmus
5aae55b59c
gnu: r-alabaster-matrix: Add test inputs. 
* gnu/packages/bioconductor.scm (r-alabaster-matrix)[native-inputs]: Add r-testthat.

Change-Id: I27e7801d3c36b5458dd6b6b3af5e31f9010e860a
 2024-12-03 16:58:47 +01:00
Ricardo Wurmus
047ce8ef1c
gnu: r-alabaster-base: Add test inputs. 
* gnu/packages/bioconductor.scm (r-alabaster-base)[native-inputs]: Add r-testthat.

Change-Id: Ia70c9406910732c4c0b18415dc706ceb8b453f87
 2024-12-03 16:58:47 +01:00
Ricardo Wurmus
c87eaf524a
gnu: r-airpart: Add test inputs. 
* gnu/packages/bioconductor.scm (r-airpart)[native-inputs]: Add r-testthat.

Change-Id: If26dcafb22b1c2ecbcea85595976faa9fc0b8845
 2024-12-03 16:58:47 +01:00
Ricardo Wurmus
50bb043fa7
gnu: r-aims: Add test inputs. 
* gnu/packages/bioconductor.scm (r-aims)[native-inputs]: Add r-runit.

Change-Id: Ia6a6fcf2dffd8644cc4e1de02cff3d2bab0ab420
 2024-12-03 16:58:47 +01:00
Ricardo Wurmus
15eeca27dc
gnu: r-adductomicsr: Add test inputs. 
* gnu/packages/bioconductor.scm (r-adductomicsr)[native-inputs]: Add r-testthat.

Change-Id: If84bd50910efa5097e0e765ee939c00c545d289b
 2024-12-03 16:58:47 +01:00
Ricardo Wurmus
ffd55c2c63
gnu: r-aggregatebiovar: Add test inputs. 
* gnu/packages/bioconductor.scm (r-aggregatebiovar)[native-inputs]: Add r-testthat.

Change-Id: I4785e48cb494d8c25cad621cd7d0f4714a7f4cea
 2024-12-03 16:58:47 +01:00
Ricardo Wurmus
06733045c6
gnu: r-adimpute: Add test inputs. 
* gnu/packages/bioconductor.scm (r-adimpute)[native-inputs]: Add r-testthat.

Change-Id: I2e5700db3fc033cc741e0dc5333a4302da8047c4
 2024-12-03 16:58:47 +01:00
Ricardo Wurmus
a89a17b71d
gnu: r-adamgui: Add test inputs. 
* gnu/packages/bioconductor.scm (r-adamgui)[native-inputs]: Add r-testthat.

Change-Id: I7bbf36cbe7ee362847806ee4d75abd6d99ae5bdd
 2024-12-03 16:58:47 +01:00
Ricardo Wurmus
1966a3ff99
gnu: r-adam: Add test inputs. 
* gnu/packages/bioconductor.scm (r-adam)[native-inputs]: Add r-testthat.

Change-Id: Icd1f362df3e2024bde37c3cde6c105a960d36b43
 2024-12-03 16:58:47 +01:00
Ricardo Wurmus
bd30fb8c65
gnu: r-sesamedata: Add test inputs. 
* gnu/packages/bioconductor.scm (r-sesamedata)[native-inputs]: Add r-testthat.

Change-Id: I6958010d257f79f4defedca40f2cffcc53f4663b
 2024-12-03 16:58:46 +01:00
Ricardo Wurmus
055cca7894
gnu: r-msigdb: Add test inputs. 
* gnu/packages/bioconductor.scm (r-msigdb)[native-inputs]: Add r-testthat.

Change-Id: I3bcf7c58a26e020396d21bb8ab698e32cdc0cc9b
 2024-12-03 16:58:46 +01:00
Ricardo Wurmus
e30182faaa
gnu: r-msexperiment: Add test inputs. 
* gnu/packages/bioconductor.scm (r-msexperiment)[native-inputs]: Add r-testthat.

Change-Id: I57cb597320c33a3666b209d58a975c698fb25d3a
 2024-12-03 16:58:46 +01:00
Ricardo Wurmus
32c5bd790b
gnu: r-mousegastrulationdata: Add test inputs. 
* gnu/packages/bioconductor.scm (r-mousegastrulationdata)[native-inputs]: Add r-testthat.

Change-Id: I9fbf801b9d2b68a7aaaa3df22c7cd3d9277d48e2
 2024-12-03 16:58:46 +01:00
Ricardo Wurmus
955e74b1b6
gnu: r-flowsorted-blood-epic: Add test inputs. 
* gnu/packages/bioconductor.scm (r-flowsorted-blood-epic)[native-inputs]: Add r-testthat.

Change-Id: I6d656386dfe188def60a6d22849961f71fc740bc
 2024-12-03 16:58:46 +01:00
Ricardo Wurmus
0c92fbcfac
gnu: r-celldex: Add test inputs. 
* gnu/packages/bioconductor.scm (r-celldex)[native-inputs]: Add r-testthat.

Change-Id: Ia4612783a71c440ef0d340b0a69c616960d3de14
 2024-12-03 16:58:46 +01:00
Ricardo Wurmus
4b2ae7f591
gnu: r-bodymaprat: Add test inputs. 
* gnu/packages/bioconductor.scm (r-bodymaprat)[native-inputs]: Add r-testthat.

Change-Id: If979c857468bebca7251630d030ba1f62f198ffc
 2024-12-03 16:58:46 +01:00
Ricardo Wurmus
009e382753
gnu: r-hgu133plus2-db: Add test inputs. 
* gnu/packages/bioconductor.scm (r-hgu133plus2-db)[native-inputs]: Add r-runit.

Change-Id: I371b934d05138a0fe391b2c662f5b9fcd57d825f
 2024-12-03 16:58:46 +01:00
Ricardo Wurmus
5898288510
gnu: r-fdb-infiniummethylation-hg19: Sort inputs. 
* gnu/packages/bioconductor.scm (r-fdb-infiniummethylation-hg19)
[propagated-inputs]: Sort inputs.

Change-Id: I02f0c61bde50054f3ba5ce5657c93b7e6622280a
 2024-12-03 16:58:46 +01:00
Ricardo Wurmus
9023cb6c32
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Add test inputs. 
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene)[propagated-inputs]: Remove r-bsgenome.

Change-Id: I0ba17e0ee4472f147b578369dfb55fb9f0f6785c
 2024-12-03 16:58:46 +01:00
Ricardo Wurmus
1cbddc9464
gnu: r-txdb-mmusculus-ucsc-mm9-knowngene: Sort inputs. 
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm9-knowngene)
[propagated-inputs]: Sort inputs.

Change-Id: I060fd07e5f4936613a58e1035b19de479808c9fd
 2024-12-03 16:58:46 +01:00
Ricardo Wurmus
6d91945bfa
gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Add test inputs. 
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)[propagated-inputs]: Add r-annotationdbi.

Change-Id: Ib01fb44884b971463990491f5d167406bc04ea86
 2024-12-03 16:58:46 +01:00
Ricardo Wurmus
4ea6893e84
gnu: r-escape: Add test inputs. 
* gnu/packages/bioconductor.scm (r-escape)[native-inputs]: Add r-testthat.

Change-Id: I613ecdbcf35e854f534fe0365b3c1f85fc713a6a
 2024-12-03 16:58:46 +01:00
Ricardo Wurmus
be56fd4317
gnu: r-org-mm-eg-db: Add test inputs. 
* gnu/packages/bioconductor.scm (r-org-mm-eg-db)[native-inputs]: Add r-runit.

Change-Id: I493fac7e9fea0d9f734bedfc14c406b62fcda232
 2024-12-03 16:58:46 +01:00
Ricardo Wurmus
992af2967e
gnu: r-org-hs-eg-db: Add test inputs. 
* gnu/packages/bioconductor.scm (r-org-hs-eg-db)[native-inputs]: Add r-runit.

Change-Id: I5651e197b1c5416a8aba1bcf2c0cb4eb30b52413
 2024-12-03 16:58:46 +01:00
Ricardo Wurmus
00987e6892
gnu: r-org-dr-eg-db: Add test inputs. 
* gnu/packages/bioconductor.scm (r-org-dr-eg-db)[native-inputs]: Add r-runit.

Change-Id: I708e299a68764fc1e61750db6d29371d45d57fa9
 2024-12-03 16:58:46 +01:00
Ricardo Wurmus
03fcd8414c
gnu: r-org-dm-eg-db: Add test inputs. 
* gnu/packages/bioconductor.scm (r-org-dm-eg-db)[native-inputs]: Add r-runit.

Change-Id: I1fbce9b374eacb733f5192e6d45a70c661ceebb4
 2024-12-03 16:58:46 +01:00
Ricardo Wurmus
c49c12a273
gnu: r-org-ce-eg-db: Add test inputs. 
* gnu/packages/bioconductor.scm (r-org-ce-eg-db)[native-inputs]: Add r-runit.

Change-Id: I8bb52212638887912321a245698a05e43e29e7c3
 2024-12-03 16:58:45 +01:00
Ricardo Wurmus
9dcebb3d98
gnu: r-homo-sapiens: Sort inputs. 
* gnu/packages/bioconductor.scm (r-homo-sapiens)[propagated-inputs]: Sort.

Change-Id: I79059a9ae27dad9bce3abc08cd366a0ab38fc5c5
 2024-12-03 16:58:45 +01:00
Ricardo Wurmus
663b82284c
gnu: r-hdo-db: Add test inputs. 
* gnu/packages/bioconductor.scm (r-hdo-db)[native-inputs]: Add r-testthat.

Change-Id: Idf6065ed980a88a493fea814909da91af8d24480
 2024-12-03 16:58:45 +01:00
Ricardo Wurmus
f8a365ab84
gnu: r-org-sc-sgd-db: Add test inputs. 
* gnu/packages/bioconductor.scm (r-org-sc-sgd-db)[native-inputs]: Add r-runit.

Change-Id: I651b3ffef1ba93f2d414bec3093bb9def590c10d
 2024-12-03 16:58:45 +01:00
Ricardo Wurmus
c2c9180f54
gnu: r-org-bt-eg-db: Add test inputs. 
* gnu/packages/bioconductor.scm (r-org-bt-eg-db)[native-inputs]: Add r-runit.

Change-Id: I0f4a4c602405ddfcc0867df86b2c6d93d19216f7
 2024-12-03 16:58:45 +01:00
Ricardo Wurmus
67059a4373
gnu: r-org-eck12-eg-db: Add test inputs. 
* gnu/packages/bioconductor.scm (r-org-eck12-eg-db)[native-inputs]: Add r-runit.

Change-Id: I8a5b4f3a479383362d70f61464c40fef80b15ad0
 2024-12-03 16:58:45 +01:00
Ricardo Wurmus
aaf5354308
gnu: r-mpo-db: Add test inputs. 
* gnu/packages/bioconductor.scm (r-mpo-db)[native-inputs]: Add r-testthat.

Change-Id: Ia100b794197f7d80f3b3579d5a1784180c6a0162
 2024-12-03 16:58:45 +01:00
Ricardo Wurmus
db968f0bf1
gnu: r-hpo-db: Add test inputs. 
* gnu/packages/bioconductor.scm (r-hpo-db)[native-inputs]: Add r-testthat.

Change-Id: I4fe35d7421c2a497b30f755cf27ca25ab4d24f40
 2024-12-03 16:58:45 +01:00
Ricardo Wurmus
6781174185
gnu: r-xvector: Add test input. 
* gnu/packages/bioconductor.scm (r-xvector)[source]: Remove trailing #T.
[native-inputs]: Add r-runit.

Change-Id: I40772af0393826a0b861318bf6bd31cabdcf07bd
 2024-12-03 16:58:45 +01:00
Ricardo Wurmus
5950800821
gnu: r-oscope: Move r-testthat to native inputs. 
* gnu/packages/bioconductor.scm (r-oscope)[propagated-inputs]: Move r-testthat
from here...
[native-inputs]: ...to here.

Change-Id: Iae9efafad4c06cc952d5605be5635630f055bc12
 2024-12-03 16:58:45 +01:00
Ricardo Wurmus
61a140987d
gnu: r-infercnv: Tell updater to keep extra input. 
* gnu/packages/bioconductor.scm (r-infercnv)[properties]: Tell updater to keep
python as extra input.

Change-Id: I506da9c098863e6a83d2ef38cacbd77500e9a940
 2024-12-03 16:58:45 +01:00
Ricardo Wurmus
f2589361c9
gnu: r-snplocs-hsapiens-dbsnp144-grch37: Remove r-biostrings. 
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37)
[propagated-inputs]: Remove r-biostrings.

Change-Id: Ic03dbabb946a47741e32f41bd79f22f97e6d111f
 2024-12-03 16:58:44 +01:00
Ricardo Wurmus
f501307529
gnu: r-basilisk: Disable tests. 
* gnu/packages/bioconductor.scm (r-basilisk)[arguments]: Disable tests.

Change-Id: I9da0801b912087930b3bacd69abf64ff72a43458
 2024-12-03 16:58:44 +01:00
Ricardo Wurmus
cf77239239
gnu: r-destiny: Remove custom check phase. 
* gnu/packages/bioconductor.scm (r-destiny)[arguments]: Remove.

Change-Id: Id1d6b7374aa4e7a4e57e39f0ff192c8194e25706
 2024-12-03 16:58:44 +01:00
Ricardo Wurmus
0d742e6854
gnu: r-summarizedexperiment: Add test inputs. 
* gnu/packages/bioconductor.scm (r-summarizedexperiment)[native-inputs]: Add
r-annotate, r-digest, r-hgu95av2-db, and r-runit.
[arguments]: Add phase 'delete-bad-test.

Change-Id: I690ea78db2553457cb1552b72e1d1d0c6815797d
 2024-12-03 16:58:44 +01:00
Ricardo Wurmus
5e5dbc2aed
gnu: r-genomicranges: Add test inputs. 
* gnu/packages/bioconductor.scm (r-genomicranges)[native-inputs]: Add
r-biostrings, r-biocstyle, and r-runit.
[arguments]: Skip building vignettes.

Change-Id: I690ea78db2553457cb1552b72e1d1d0c6815797d
 2024-12-03 16:58:44 +01:00
Ricardo Wurmus
8a1db63976
gnu: r-genomicalignments: Add test inputs. 
* gnu/packages/bioconductor.scm (r-genomicalignments)[native-inputs]: Add
r-pasillabamsubset and r-runit.
[arguments]: Skip building vignettes.

Change-Id: I23beefebad4ec326513712a37dfc2218435869ae
 2024-12-03 16:58:43 +01:00
Ricardo Wurmus
634f50b9d9
gnu: r-biocparallel: Add test inputs. 
* gnu/packages/bioconductor.scm (r-biocparallel)[native-inputs]: Add
r-batchtools, r-biocgenerics, r-doparallel, and r-runit.

Change-Id: I1c74df5ae623f9e0067913202ee366d8f5293aeb
 2024-12-03 16:58:43 +01:00
Ricardo Wurmus
79a2146e17
gnu: r-biocstyle: Add test inputs. 
* gnu/packages/bioconductor.scm (r-biocstyle)[native-inputs]: Add ghostscript,
r-biocgenerics, r-runit, texlive-bera, texlive-booktabs, texlive-caption,
texlive-changepage, texlive-enumitem, texlive-etoolbox, texlive-etoolbox,
texlive-fancyhdr, texlive-fancyvrb, texlive-footmisc, texlive-framed,
texlive-geometry, texlive-helvetic, texlive-marginfix, texlive-mathtools,
texlive-nowidow, texlive-parnotes, texlive-parskip, texlive-pdfcrop,
texlive-placeins, texlive-preprint, texlive-ragged2e, texlive-soul,
texlive-titlesec, texlive-titling, and texlive-xcolor.

Change-Id: I171ec9694d69a561d2c7357048cbf0ed09db0918
 2024-12-03 16:58:41 +01:00
Ricardo Wurmus
a5ffc5989e
gnu: r-biocfilecache: Disable tests. 
* gnu/packages/bioconductor.scm (r-biocfilecache)[arguments]: Disable tests.

Change-Id: Ia38a87ad3921e661eb14cc60006d203022091118
 2024-12-03 16:58:39 +01:00
Ricardo Wurmus
d9332edfb7
gnu: r-variantannotation: Add test inputs. 
* gnu/packages/bioconductor.scm (r-variantannotation)[native-inputs]: Add
r-bsgenome-hsapiens-ucsc-hg19, r-runit, r-snpstats, and
r-txdb-hsapiens-ucsc-hg19-knowngene.
[arguments]: Add phase 'delete-bad-tests.

Change-Id: I3e59d83ea1d2a0454137877539f6b0acc2681231
 2024-12-03 16:58:39 +01:00
Ricardo Wurmus
fdeab5ae19
gnu: r-seqpattern: Add test inputs. 
* gnu/packages/bioconductor.scm (r-seqpattern)[native-inputs]: Add
r-biocstyle, r-bsgenome-drerio-ucsc-danrer7, and r-runit.

Change-Id: I2312f1a6801430f968155411c6264bd1d33b83f2
 2024-12-03 16:58:39 +01:00