Commit graph

7051 commits

Author SHA1 Message Date
Ricardo Wurmus
1b8e375054
gnu: r-codedepends: Add missing input.
* gnu/packages/bioconductor.scm (r-codedepends)[native-inputs]: Add
r-rgraphviz.

Change-Id: I1d122d4ac01b003ea6de5fb1df99399839fcea4d
2024-12-03 16:59:35 +01:00
Ricardo Wurmus
7a91b799e9
gnu: r-geneoverlap: Add missing inputs.
* gnu/packages/bioconductor.scm (r-geneoverlap)[native-inputs]: Add
r-biocgenerics and r-biocstyle.

Change-Id: I538015455338a1ae8991e3b3a63bc2a951ad1d36
2024-12-03 16:59:35 +01:00
Ricardo Wurmus
506ab55394
gnu: r-rgraphviz: Add missing input.
* gnu/packages/bioconductor.scm (r-rgraphviz)[native-inputs]: Add r-xml.
[arguments]: Remove trailing #T.

Change-Id: I08df02db7f4a9d224cee5516c5bb15c836e79f7b
2024-12-03 16:59:35 +01:00
Ricardo Wurmus
61bc2bf53f
gnu: r-genetclassifier: Add missing input.
* gnu/packages/bioconductor.scm (r-genetclassifier)[native-inputs]: Add
r-leukemiaseset.

Change-Id: Ic2d2915acb5964b83212a6124b6e596b4f13c006
2024-12-03 16:59:35 +01:00
Ricardo Wurmus
363b13284b
gnu: Add r-leukemiaseset.
* gnu/packages/bioconductor.scm (r-leukemiaseset): New variable.

Change-Id: Ida95165c48e074dbf841ec2c43ad3fb7da025fa3
2024-12-03 16:59:35 +01:00
Ricardo Wurmus
fbe8f8c0a2
gnu: r-aims: Add test inputs.
* gnu/packages/bioconductor.scm (r-aims)[native-inputs]: Add
r-breastcancervdx and r-hgu133a-db.

Change-Id: I980638a323893d1c4d00cfa2b23b3f5367aad9a5
2024-12-03 16:59:35 +01:00
Ricardo Wurmus
4649320397
gnu: Add r-hgu133a-db.
* gnu/packages/bioconductor.scm (r-hgu133a-db): New variable.

Change-Id: I200ec7534c32e701ecc3117e04c5a10ea9a9ebf8
2024-12-03 16:59:35 +01:00
Ricardo Wurmus
3aaf4a680e
gnu: r-xmapbridge: Add test input.
* gnu/packages/bioconductor.scm (r-xmapbridge)[native-inputs]: Add
r-rcolorbrewer.

Change-Id: I231a68e013192a9ce669f23c4a5342ee917ffede
2024-12-03 16:59:33 +01:00
Ricardo Wurmus
374f87e974
gnu: r-preprocesscore: Disable tests.
* gnu/packages/bioconductor.scm (r-preprocesscore)[arguments]: Disable tests.

Change-Id: If3704b4fdf712b8ab65c02f55ed1c0cefc64fc8e
2024-12-03 16:59:33 +01:00
Ricardo Wurmus
8ffb514759
gnu: r-iclusterplus: Add test inputs.
* gnu/packages/bioconductor.scm (r-iclusterplus)[native-inputs]: Add r-biocgenerics.

Change-Id: Ic533681df4abd0f4d73a40ba4e3cf00a9d3fb1f2
2024-12-03 16:59:33 +01:00
Ricardo Wurmus
2cd26380cf
gnu: r-phyloseq: Add test inputs.
* gnu/packages/bioconductor.scm (r-phyloseq)[native-inputs]: Add r-testthat.

Change-Id: I5efb7f70d026356a21792eb0a702fe7b44eb0104
2024-12-03 16:59:09 +01:00
Ricardo Wurmus
7cca7cf944
gnu: r-tximeta: Add test inputs.
* gnu/packages/bioconductor.scm (r-tximeta)[native-inputs]: Add r-testthat.

Change-Id: Ie74a58df50baab9c29a4945ccb9401f13532c2e2
2024-12-03 16:59:09 +01:00
Ricardo Wurmus
45e58a8adc
gnu: r-tricycle: Add test inputs.
* gnu/packages/bioconductor.scm (r-tricycle)[native-inputs]: Add r-testthat.

Change-Id: I88da2db8cea12ab5a4a48e9108d07d55399f5c61
2024-12-03 16:59:09 +01:00
Ricardo Wurmus
37eaf21552
gnu: r-tcgabiolinks: Add test inputs.
* gnu/packages/bioconductor.scm (r-tcgabiolinks)[native-inputs]: Add r-testthat.

Change-Id: I0347612e43863b6c2e54b36280be92f53869163d
2024-12-03 16:59:09 +01:00
Ricardo Wurmus
a501de3e2e
gnu: r-biscuiteer: Add test inputs.
* gnu/packages/bioconductor.scm (r-biscuiteer)[native-inputs]: Add r-testthat.

Change-Id: I745cf32c7167fa48012a095181d03556da27e885
2024-12-03 16:59:09 +01:00
Ricardo Wurmus
67736f0344
gnu: r-omnipathr: Add test inputs.
* gnu/packages/bioconductor.scm (r-omnipathr)[native-inputs]: Add r-testthat.

Change-Id: I761511c9d2330f07565f252f7acabfaf298334ed
2024-12-03 16:59:09 +01:00
Ricardo Wurmus
11f7cd2545
gnu: r-bsseq: Add test inputs.
* gnu/packages/bioconductor.scm (r-bsseq)[native-inputs]: Add r-testthat.

Change-Id: I2689bd7786a77b223113d42c779420e5405d3a0c
2024-12-03 16:59:08 +01:00
Ricardo Wurmus
fb6c6e959e
gnu: r-biotmle: Add test inputs.
* gnu/packages/bioconductor.scm (r-biotmle)[native-inputs]: Add r-testthat.

Change-Id: Ibb5cb54b0567a2a4eb16ab89eb3df634c0e3349a
2024-12-03 16:59:08 +01:00
Ricardo Wurmus
635302f63c
gnu: r-bioqc: Add test inputs.
* gnu/packages/bioconductor.scm (r-bioqc)[native-inputs]: Add r-testthat.

Change-Id: I793f59b90dec85300d10a999bbfecb4dc554670c
2024-12-03 16:59:08 +01:00
Ricardo Wurmus
bc465a8f43
gnu: r-bionero: Add test inputs.
* gnu/packages/bioconductor.scm (r-bionero)[native-inputs]: Add r-testthat.

Change-Id: Ia59244927accd1f6a6cd16d2b5ffcec28b1cc0c6
2024-12-03 16:59:08 +01:00
Ricardo Wurmus
f899dabbd0
gnu: r-biomformat: Add test inputs.
* gnu/packages/bioconductor.scm (r-biomformat)[native-inputs]: Add r-testthat.

Change-Id: I6bbf0ad203fc3cdbd823e81031868f916154865a
2024-12-03 16:59:08 +01:00
Ricardo Wurmus
6a6965c1e6
gnu: r-biodb: Add test inputs.
* gnu/packages/bioconductor.scm (r-biodb)[native-inputs]: Add r-testthat.

Change-Id: I2e1966465b55185312cfc3c7915c0afc82b31f18
2024-12-03 16:59:08 +01:00
Ricardo Wurmus
5ffd257208
gnu: r-biocthis: Add test inputs.
* gnu/packages/bioconductor.scm (r-biocthis)[native-inputs]: Add r-testthat.

Change-Id: I2d3557752a5c20d8cc28c73ed402477c1ca92e34
2024-12-03 16:59:08 +01:00
Ricardo Wurmus
c91be8d12a
gnu: r-baynorm: Add test inputs.
* gnu/packages/bioconductor.scm (r-baynorm)[native-inputs]: Add r-testthat.

Change-Id: I656dccf9f911532ed24939a2226ec8b082ba9fdd
2024-12-03 16:59:08 +01:00
Ricardo Wurmus
df91f5ffd0
gnu: r-bayesspace: Add test inputs.
* gnu/packages/bioconductor.scm (r-bayesspace)[native-inputs]: Add r-testthat.

Change-Id: Ifa9c5d77fc7479cca6278692aed93b970cc1e52f
2024-12-03 16:59:08 +01:00
Ricardo Wurmus
406ad93869
gnu: r-basilisk-utils: Add test inputs.
* gnu/packages/bioconductor.scm (r-basilisk-utils)[native-inputs]: Add r-testthat.

Change-Id: Iea1a88ccb2978fb15cf7cc23875d64ec4de9ed7b
2024-12-03 16:59:08 +01:00
Ricardo Wurmus
01c4e53dba
gnu: r-basics: Add test inputs.
* gnu/packages/bioconductor.scm (r-basics)[native-inputs]: Add r-testthat.

Change-Id: If87aec4eb3fad7425c663d4a2b8551863d78dbb8
2024-12-03 16:59:08 +01:00
Ricardo Wurmus
75001b5125
gnu: r-dir-expiry: Add test inputs.
* gnu/packages/bioconductor.scm (r-dir-expiry)[native-inputs]: Add r-testthat.

Change-Id: I3032c0b95174e243032ba797c01efad811ce0d03
2024-12-03 16:59:08 +01:00
Ricardo Wurmus
c9665dc7e3
gnu: r-genetclassifier: Add test inputs.
* gnu/packages/bioconductor.scm (r-genetclassifier)[native-inputs]: Add r-runit.

Change-Id: I0d74e2555590655152c5d085d4e410fad19c261c
2024-12-03 16:59:08 +01:00
Ricardo Wurmus
9d95234d0a
gnu: r-biobtreer: Add test inputs.
* gnu/packages/bioconductor.scm (r-biobtreer)[native-inputs]: Add r-testthat.

Change-Id: I848a033cbb9af723d5cde23bdf839bc7d89ce73f
2024-12-03 16:59:08 +01:00
Ricardo Wurmus
f05bebef6c
gnu: r-bgeedb: Add test inputs.
* gnu/packages/bioconductor.scm (r-bgeedb)[native-inputs]: Add r-testthat.

Change-Id: I6901b548d6e9751ebd723f7f427f7f2b8e12b5fc
2024-12-03 16:59:08 +01:00
Ricardo Wurmus
db3616a817
gnu: r-bgeecall: Add test inputs.
* gnu/packages/bioconductor.scm (r-bgeecall)[native-inputs]: Add r-testthat.

Change-Id: Ic0e6cef2d334d4ebc6e31ab020101afa59fc619b
2024-12-03 16:59:07 +01:00
Ricardo Wurmus
072b273bc9
gnu: r-beclear: Add test inputs.
* gnu/packages/bioconductor.scm (r-beclear)[native-inputs]: Add r-testthat.

Change-Id: Ie4d72ef55f96149ea42220d3d93ff44436f3bee1
2024-12-03 16:59:07 +01:00
Ricardo Wurmus
0424471ca7
gnu: r-megadepth: Add test inputs.
* gnu/packages/bioconductor.scm (r-megadepth)[native-inputs]: Add r-testthat.

Change-Id: I516640d35ad0d66effdabb23567ac6d2906aee68
2024-12-03 16:59:07 +01:00
Ricardo Wurmus
3c517a5851
gnu: r-ballgown: Add test inputs.
* gnu/packages/bioconductor.scm (r-ballgown)[native-inputs]: Add r-testthat.

Change-Id: I75694f78d61f74ffc8051b1a329956624d3f247a
2024-12-03 16:59:07 +01:00
Ricardo Wurmus
9adb097f41
gnu: r-snprelate: Add test inputs.
* gnu/packages/bioconductor.scm (r-snprelate)[native-inputs]: Add r-runit.

Change-Id: Ie0a991bd08e158ffe600242a7fa890a143daab64
2024-12-03 16:59:07 +01:00
Ricardo Wurmus
36ff7e084e
gnu: r-pathview: Add test inputs.
* gnu/packages/bioconductor.scm (r-pathview)[native-inputs]: Add r-runit.

Change-Id: Ief755820ff4f2101b47f3de984407edfbddbd7e4
2024-12-03 16:59:07 +01:00
Ricardo Wurmus
78d09ad24d
gnu: r-parody: Add test inputs.
* gnu/packages/bioconductor.scm (r-parody)[native-inputs]: Add r-testthat.

Change-Id: I742840f3ece2c064ce3faf6ab9f72aef25fb984d
2024-12-03 16:59:07 +01:00
Ricardo Wurmus
81d9aaf17b
gnu: r-abn: Add test inputs.
* gnu/packages/bioconductor.scm (r-abn)[native-inputs]: Add r-testthat.

Change-Id: I87daf103327085cd6c9df8a0c6e19ad461dc757f
2024-12-03 16:59:07 +01:00
Ricardo Wurmus
08a8805109
gnu: r-ldblock: Add test inputs.
* gnu/packages/bioconductor.scm (r-ldblock)[native-inputs]: Add r-runit.

Change-Id: I81abf31222306ed747ba3a37fa3441a4487f2cc5
2024-12-03 16:59:07 +01:00
Ricardo Wurmus
ffb2d7bc82
gnu: r-kegggraph: Add test inputs.
* gnu/packages/bioconductor.scm (r-kegggraph)[native-inputs]: Add r-testthat.

Change-Id: I70437d6a99de574006ebb629fe8ffe0dc5ef721d
2024-12-03 16:59:07 +01:00
Ricardo Wurmus
3889180bc4
gnu: r-gwastools: Add test inputs.
* gnu/packages/bioconductor.scm (r-gwastools)[native-inputs]: Add r-runit.

Change-Id: I28f9cd92e0367beb532c7ed1b4ac391340bf8c4d
2024-12-03 16:59:07 +01:00
Ricardo Wurmus
727d4df8cd
gnu: r-gwascat: Add test inputs.
* gnu/packages/bioconductor.scm (r-gwascat)[native-inputs]: Add r-testthat.

Change-Id: I09f834a7404f296314ff83337d02be45d50a78d1
2024-12-03 16:59:07 +01:00
Ricardo Wurmus
d5fea663b7
gnu: r-gviz: Add test inputs.
* gnu/packages/bioconductor.scm (r-gviz)[native-inputs]: Add r-testthat.

Change-Id: I43156f5db8f43984bcf91133f74b9fa53aad4b35
2024-12-03 16:59:07 +01:00
Ricardo Wurmus
3636e6822e
gnu: r-ggbio: Add test inputs.
* gnu/packages/bioconductor.scm (r-ggbio)[native-inputs]: Add r-testthat.

Change-Id: I876af8c939ce01ffd50384deebeed611147f0577
2024-12-03 16:59:07 +01:00
Ricardo Wurmus
ec14a06a79
gnu: r-catalyst: Add test inputs.
* gnu/packages/bioconductor.scm (r-catalyst)[native-inputs]: Add r-testthat.

Change-Id: Iaadeb0a68d3f24db638900d9e830f0f30de6b10d
2024-12-03 16:59:07 +01:00
Ricardo Wurmus
b64ce73a4f
gnu: r-biocio: Add test inputs.
* gnu/packages/bioconductor.scm (r-biocio)[native-inputs]: Add r-testthat.

Change-Id: I7cd37bace7b3a74971598b5dbd8e02f0e2a3394a
2024-12-03 16:59:06 +01:00
Ricardo Wurmus
57d19f436f
gnu: r-msfeatures: Add test inputs.
* gnu/packages/bioconductor.scm (r-msfeatures)[native-inputs]: Add r-testthat.

Change-Id: I3b2640ad6c79e4e0244d7617eb6fcd832ae62311
2024-12-03 16:59:06 +01:00
Ricardo Wurmus
a2610bcb5e
gnu: r-mscoreutils: Add test inputs.
* gnu/packages/bioconductor.scm (r-mscoreutils)[native-inputs]: Add r-testthat.

Change-Id: Ib909e1a247ca6b22a844aec19d17075750bf99db
2024-12-03 16:59:06 +01:00
Ricardo Wurmus
fec0fe9f8d
gnu: r-spatialexperiment: Add test inputs.
* gnu/packages/bioconductor.scm (r-spatialexperiment)[native-inputs]: Add r-testthat.

Change-Id: I8cff26a5174c4ac6265c1e54bbcb31725432c143
2024-12-03 16:59:06 +01:00