Ricardo Wurmus
|
199636cd7b
|
gnu: r-txdbmaker: Add test inputs.
* gnu/packages/bioconductor.scm (r-txdbmaker)[native-inputs]: Add r-rmariadb.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I22fe422410a41998e4fa3552cfaa1dba3e245c10
|
2024-12-03 16:59:43 +01:00 |
|
Ricardo Wurmus
|
0af2fc1f06
|
gnu: r-biomart: Add test inputs.
* gnu/packages/bioconductor.scm (r-biomart)[native-inputs]: Add r-httptest2
and r-mockery.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I07aacb1f73a8afd49a1645da8c1bf2d22dde7873
|
2024-12-03 16:59:43 +01:00 |
|
Ricardo Wurmus
|
ec8709d5eb
|
gnu: r-metagenomeseq: Add test inputs.
* gnu/packages/bioconductor.scm (r-metagenomeseq)[native-inputs]: Add
r-testthat.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I702d02695fe0b078bd2b97b958a0bbde73d0c2d5
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
b4c9f8368a
|
gnu: r-ioniser: Add missing inputs.
* gnu/packages/bioconductor.scm (r-ioniser)[native-inputs]: Add
r-minionsummarydata.
Change-Id: Ie478db21c33c6d279937678b8103cca5df228a09
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
35550df0e5
|
gnu: Add r-minionsummarydata.
* gnu/packages/bioconductor.scm (r-minionsummarydata): New variable.
Change-Id: I61318a1338bbff117e38d3ce5963dd061e5175a9
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
82ace693ec
|
gnu: r-glimma: Add missing inputs.
* gnu/packages/bioconductor.scm (r-glimma)[native-inputs]: Add r-pryr.
Change-Id: I9109cc636e758df436aaae38c3b2bd735b1e4cc0
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
5460c2aed8
|
gnu: r-systempiper: Add missing inputs and disable tests.
* gnu/packages/bioconductor.scm (r-systempiper)[native-inputs]: Add
r-systempiperdata.
[arguments]: Disable tests.
Change-Id: Ic071bbcb53ef9fb96385fbbdb5725ed2a4490db7
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
877c366285
|
gnu: r-roar: Add missing inputs.
* gnu/packages/bioconductor.scm (r-roar)[native-inputs]: Add
r-rnaseqdata-hnrnpc-bam-chr14.
Change-Id: Ic5fa181d52e87ba7039e0000f5610eb46150bbfc
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
8c08529608
|
gnu: Add r-systempiperdata.
* gnu/packages/bioconductor.scm (r-systempiperdata): New variable.
Change-Id: I125e8003073ffc5fa7f20d3efa0f3ead71eaafe3
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
7cc00303ec
|
gnu: r-sgseq: Add missing inputs.
* gnu/packages/bioconductor.scm (r-sgseq)[native-inputs]: Add
r-bsgenome-hsapiens-ucsc-hg19.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I5ff9e2af754700e5ba70ad7bdd1be5ec952946a3
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
af70af3529
|
gnu: Add r-rnaseqdata-hnrnpc-bam-chr14.
* gnu/packages/bioconductor.scm (r-rnaseqdata-hnrnpc-bam-chr14): New variable.
Change-Id: If2f9bf10e3e1396cfd31e3278020d623ce2253e0
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
c8612c38a4
|
gnu: r-bioqc: Add missing inputs.
* gnu/packages/bioconductor.scm (r-bioqc)[native-inputs]: Add r-ineq.
Change-Id: I090a0d25f87d23119e66a69ca37c16d7b384a01a
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
47141f2cc4
|
gnu: r-organism-dplyr: Add missing inputs.
* gnu/packages/bioconductor.scm (r-organism-dplyr)[native-inputs]: Add
r-txdb-hsapiens-ucsc-hg38-knowngene and r-txdb-mmusculus-ucsc-mm10-ensgene.
Change-Id: I1dbf8d71f9a29d1a95e70a4b44042155af4a1222
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
4dd6d8a4ba
|
gnu: r-genomicdatacommons: Delete bad tests.
* gnu/packages/bioconductor.scm (r-genomicdatacommons)[arguments]: Add phase
'delete-bad-tests.
Change-Id: I9e09a99cc3e07d4d3a568d1058c717a74de925bc
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
b004a53d62
|
gnu: Add r-txdb-mmusculus-ucsc-mm10-ensgene.
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-ensgene): New variable.
Change-Id: I5caa7d292ea0f81df5acf3f522fd3cf1ca9acb13
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
353620e84a
|
gnu: r-megadepth: Add missing inputs and disable tests.
* gnu/packages/bioconductor.scm (r-megadepth)[propagated-inputs]: Add
megadepth.
[arguments]: Disable tests.
[inputs]: Remove empty field.
[properties]: Tell updater to keep megadepth as a propagated input.
Change-Id: Idbbc371c2d66aa7c0d7e2add13fa35a5b4f9cd77
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
2f5201970e
|
gnu: r-alpine: Add missing inputs.
* gnu/packages/bioconductor.scm (r-alpine)[native-inputs]: Add r-testthat.
Change-Id: I0dece0c9def13b5aed392b0a8404ee96e3d57ab5
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
5c35a8713f
|
gnu: r-biocdockermanager: Add missing inputs.
* gnu/packages/bioconductor.scm (r-biocdockermanager)[native-inputs]: Add
r-testthat.
Change-Id: I22918f6024bcd2e31f7707ee2dcd2a98061a6136
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
438324d633
|
gnu: r-motifdb: Add missing inputs.
* gnu/packages/bioconductor.scm (r-motifdb)[native-inputs]: Add r-seqlogo.
Change-Id: I4a2316e35ba4b2c79f01edb1d887702102b1106c
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
4133b726d2
|
gnu: r-dittoseq: Add missing inputs.
* gnu/packages/bioconductor.scm (r-dittoseq)[native-inputs]: Add
r-complexheatmap, r-deseq2, r-edger r-ggplot-multistats, r-ggrastr, and
r-plotly.
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
1e2f293b00
|
gnu: r-complexheatmap: Add missing inputs.
* gnu/packages/bioconductor.scm (r-complexheatmap)[native-inputs]: Add
r-dendextend, r-genomicranges, and r-gridtext.
Change-Id: If306ccd62519e8af3314b6aadcac3a34f08d9138
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
4822f81f38
|
gnu: r-fishpond: Add missing inputs.
* gnu/packages/bioconductor.scm (r-fishpond)[native-inputs]: Add r-data-table,
r-deseq2, and r-samr.
Change-Id: I5e3c827f274a20ff410287f39b3a57de66b77f01
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
90c656d7f7
|
gnu: r-geoquery: Disable tests.
* gnu/packages/bioconductor.scm (r-geoquery)[arguments]: Disable tests.
Change-Id: Ibd30534cfb1f6bd4927f16908a749dd1881932e4
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
3d81ebcd65
|
gnu: r-annotationforge: Add missing inputs.
* gnu/packages/bioconductor.scm (r-annotationforge)[native-inputs]: Add
r-go-db.
Change-Id: Ie1b824fd4215e6583fd561b5d959dec52ce19eaa
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
3124b2d0ab
|
gnu: r-greylistchip: Add missing inputs.
* gnu/packages/bioconductor.scm (r-greylistchip)[native-inputs]: Add
r-biocstyle.
Change-Id: I65ce2be5b87171bf752da4181dbf8eea1f2d50c3
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
cf61116d55
|
gnu: r-pcatools: Add missing inputs.
* gnu/packages/bioconductor.scm (r-pcatools)[native-inputs]: Add r-scran.
Change-Id: Ie815aa731b3ef52560315bd040eca42f69f3f890
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
fd4174e97e
|
gnu: r-sva: Add missing inputs.
* gnu/packages/bioconductor.scm (r-sva)[native-inputs]: Add r-biocstyle,
r-bladderbatch, r-pamr, and r-zebrafishrnaseq.
Change-Id: Ie97432eec92258c680814a45ff842c17674c3ecc
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
15493dbf3d
|
gnu: Add r-zebrafishrnaseq.
* gnu/packages/bioconductor.scm (r-zebrafishrnaseq): New variable.
Change-Id: I5fe044acef56aba8601fea9cc766bbf69594714b
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
0a2a23b015
|
gnu: r-mlinterfaces: Add missing inputs.
* gnu/packages/bioconductor.scm (r-mlinterfaces)[native-inputs]: Add
r-golubesets.
Change-Id: I509c44b49974c423ce138db74dc0275de5a6570d
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
c71f959346
|
gnu: Add r-oligodata.
* gnu/packages/bioconductor.scm (r-oligodata): New variable.
Change-Id: I605b877f91c068180c55da5ecbbd62b6071fde3c
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
ad54870cd0
|
gnu: Add r-pd-mapping50k-hind240.
* gnu/packages/bioconductor.scm (r-pd-mapping50k-hind240): New variable.
Change-Id: I11680ac9b36494565f22f83cc4cae49f8d751b13
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
dadd2ab005
|
gnu: r-oligo: Disable tests.
* gnu/packages/bioconductor.scm (r-oligo)[arguments]: Disable tests.
Change-Id: Ief8655fed61142efa86cdf0170e417fde2f4c617
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
2424b73815
|
gnu: r-oligoclasses: Disable tests.
* gnu/packages/bioconductor.scm (r-oligoclasses)[arguments]: Disable tests.
Change-Id: I0f8513449464a7fce0a353bcaf62b67bc58f31fe
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
d80c49da93
|
gnu: r-oligoclasses: Add missing inputs.
* gnu/packages/bioconductor.scm (r-oligoclasses)[native-inputs]: Add
r-genomewidesnp6crlmm and r-human370v1ccrlmm.
Change-Id: I597e4fe28ec054376a8a4bbf2f87492d1a7bdce1
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
dc0649af27
|
gnu: Add r-human370v1ccrlmm.
* gnu/packages/bioconductor.scm (r-human370v1ccrlmm): New variable.
Change-Id: I46b8f5aa896fb1357cfe0329bbd6e25d7fd9db9c
|
2024-12-03 16:59:39 +01:00 |
|
Ricardo Wurmus
|
11a2385e7c
|
gnu: Add r-genomewidesnp6crlmm.
* gnu/packages/bioconductor.scm (r-genomewidesnp6crlmm): New variable.
Change-Id: I6291cc56961076ecff1fba835e936036e7fdf35b
|
2024-12-03 16:59:39 +01:00 |
|
Ricardo Wurmus
|
512215a427
|
gnu: r-linnorm: Add missing inputs.
* gnu/packages/bioconductor.scm (r-linnorm)[native-inputs]: Add r-matrixstats
and r-moments.
Change-Id: I5b1273c24d865bf90b481f426a3cc70032bdfc47
|
2024-12-03 16:59:39 +01:00 |
|
Ricardo Wurmus
|
46f90414e4
|
gnu: r-varianttools: Add missing inputs.
* gnu/packages/bioconductor.scm (r-varianttools)[native-inputs]: Add
r-lungcancerlines.
Change-Id: I0d9d226a15d56d5ff9873ccc3b2f1b7cad31d8af
|
2024-12-03 16:59:39 +01:00 |
|
Ricardo Wurmus
|
ef4c6b1b04
|
gnu: Add r-lungcancerlines.
* gnu/packages/bioconductor.scm (r-lungcancerlines): New variable.
Change-Id: I4f688432cf3ec4361cd870ef12abef8678a5f665
|
2024-12-03 16:59:39 +01:00 |
|
Ricardo Wurmus
|
8e037e51c0
|
gnu: r-structuralvariantannotation: Add missing inputs.
* gnu/packages/bioconductor.scm (r-structuralvariantannotation)
[native-inputs]: Add r-bsgenome-hsapiens-ucsc-hg19 and r-tidyverse.
Change-Id: I2f91947e09b046f314faefc86bd2bbfdd7bf14de
|
2024-12-03 16:59:39 +01:00 |
|
Ricardo Wurmus
|
d4e0ad36e1
|
gnu: r-annmap: Fix tests.
* gnu/packages/bioconductor.scm (r-annmap)[arguments]: Add phase 'set-HOME.
Change-Id: I0962b8da16f121bca7b5f1b619386447875dd108
|
2024-12-03 16:59:39 +01:00 |
|
Ricardo Wurmus
|
f90b5b907b
|
gnu: r-chipcomp: Add missing inputs.
* gnu/packages/bioconductor.scm (r-chipcomp)[native-inputs]: Add r-biocstyle.
Change-Id: I7aeab9d0169480602286bce5f1374b70d2c50e75
|
2024-12-03 16:59:39 +01:00 |
|
Ricardo Wurmus
|
7913e1437a
|
gnu: r-mutationalpatterns: Add missing inputs.
* gnu/packages/bioconductor.scm (r-mutationalpatterns)[native-inputs]: Add
r-ccfindr.
Change-Id: I294c6c4d361c70c55e58509b2ff6512c24dd3978
|
2024-12-03 16:59:39 +01:00 |
|
Ricardo Wurmus
|
9024b73395
|
gnu: Add r-ccfindr.
* gnu/packages/bioconductor.scm (r-ccfindr): New variable.
Change-Id: Icc76252494a1750888b8218df36ed002096c0268
|
2024-12-03 16:59:39 +01:00 |
|
Ricardo Wurmus
|
cdd933d35a
|
gnu: r-abn: Add test inputs.
* gnu/packages/bioconductor.scm (r-abn)[arguments]: Add phase
'delete-bad-tests.
[native-inputs]: Add r-entropy, r-moments, and r-rhpcblasctl.
Change-Id: Id981a537882ecc620232049e6831de657ec7f29a
|
2024-12-03 16:59:38 +01:00 |
|
Ricardo Wurmus
|
3f428ecb79
|
gnu: r-kegggraph: Add test inputs.
* gnu/packages/bioconductor.scm (r-kegggraph)[arguments]: Disable vignettes.
[native-inputs]: Add r-hgu133plus2-db and r-rbgl.
Change-Id: I7958c35cb0e507b209578c0a5d0a093fc9759e0c
|
2024-12-03 16:59:38 +01:00 |
|
Ricardo Wurmus
|
56ca7e67fa
|
gnu: r-snprelate: Add test inputs.
* gnu/packages/bioconductor.scm (r-snprelate)[native-inputs]: Add
r-biocgenerics and r-matrix.
Change-Id: Ie0f58fc3a94622a316213bc6f50d2f1e30199f1a
|
2024-12-03 16:59:38 +01:00 |
|
Ricardo Wurmus
|
5eca4fff85
|
gnu: r-gwastools: Disable tests.
* gnu/packages/bioconductor.scm (r-gwastools)[arguments]: Disable tests.
Change-Id: Ie5a0d07995d54c5824dde99cf3854e0c69aac2e8
|
2024-12-03 16:59:38 +01:00 |
|
Ricardo Wurmus
|
14048ace46
|
gnu: r-affy: Disable tests.
* gnu/packages/bioconductor.scm (r-affy)[arguments]: Disable tests.
Change-Id: Iad8b990c573e417d611c3198110d6dc42deb5e2b
|
2024-12-03 16:59:38 +01:00 |
|
Ricardo Wurmus
|
09b42fdeed
|
gnu: r-seqarray: Add test inputs.
* gnu/packages/bioconductor.scm (r-seqarray)[native-inputs]: Add r-digest,
r-matrix, and r-variantannotation.
Change-Id: Iea288da4b74c575c28187353d8235700c5595c46
|
2024-12-03 16:59:38 +01:00 |
|