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5765 commits

Author SHA1 Message Date
Ricardo Wurmus
2a88a148fc
gnu: r-universalmotif: Update to 1.22.1.
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.22.1.

Change-Id: I60a617d120e5da046decb491b7641f1e10aac0cb
2024-08-17 21:54:21 +02:00
Ricardo Wurmus
32a3206b4b
gnu: r-clusterprofiler: Update to 4.12.2.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.12.2.

Change-Id: I17d837fb314c26fcb26c13240a01c91bc2da9797
2024-08-17 21:54:21 +02:00
Ricardo Wurmus
91a56bc013
gnu: r-enrichplot: Update to 1.24.2.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.24.2.

Change-Id: I188e7e908a09337d4bacf4802b1557ddd31048f3
2024-08-17 21:54:21 +02:00
Ricardo Wurmus
ad1acb8114
gnu: r-dose: Update to 3.30.2.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.30.2.

Change-Id: Ic07fab82efcbda004d6c7ff21d4ed7b49cc426fb
2024-08-17 21:54:21 +02:00
Ricardo Wurmus
7079d13d04
gnu: r-chippeakanno: Update to 3.38.1.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.38.1.

Change-Id: Ia4c89074674f3473e11f3b9e1f9ed828701591f6
2024-08-17 21:54:21 +02:00
Ricardo Wurmus
efb25a259a
gnu: r-qfeatures: Update to 1.14.2.
* gnu/packages/bioconductor.scm (r-qfeatures): Update to 1.14.2.

Change-Id: I93c4fc00d19b18a1e0981f21dd0950d1e1a81f37
2024-08-17 21:54:21 +02:00
Ricardo Wurmus
20134ae2e4
gnu: r-seqarray: Update to 1.44.1.
* gnu/packages/bioconductor.scm (r-seqarray): Update to 1.44.1.

Change-Id: I06bb0b45d1a4299e835f7a18c7ed70d847bdb565
2024-08-17 21:54:21 +02:00
Ricardo Wurmus
f74e27f072
gnu: r-msa: Update to 1.36.1.
* gnu/packages/bioconductor.scm (r-msa): Update to 1.36.1.

Change-Id: I91665d8ff4cd7570b5bcad27ff132611a09b8ecc
2024-08-17 21:54:21 +02:00
Ricardo Wurmus
2a1a1738dd
gnu: r-limma: Update to 3.60.4.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.60.4.

Change-Id: Iaaf9317ab3921070f5b8e06a7948b42575bbe00b
2024-08-17 21:54:21 +02:00
Ricardo Wurmus
0e0b349f6b
gnu: r-raggedexperiment: Update to 1.28.1.
* gnu/packages/bioconductor.scm (r-raggedexperiment): Update to 1.28.1.

Change-Id: If7e8b60435413acda999f055bf9f104929e7f50f
2024-08-17 21:54:21 +02:00
Ricardo Wurmus
43b84eeb84
gnu: r-edger: Update to 4.2.1.
* gnu/packages/bioconductor.scm (r-edger): Update to 4.2.1.

Change-Id: Ia8cb57ada3f036f7fe45972ad1d3a8ff2e53c27b
2024-08-17 21:54:21 +02:00
Ricardo Wurmus
e00e778eee
gnu: r-iranges: Update to 2.38.1.
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.38.1.

Change-Id: I95d34fb3f339590c1980b7a77093835baa0e0136
2024-08-17 21:54:21 +02:00
Ricardo Wurmus
defb0e7676
gnu: r-dmrcate: Update to 3.0.5.
* gnu/packages/bioconductor.scm (r-dmrcate): Update to 3.0.5.

Change-Id: I88768682f65b821e188f29c4dfee94927040cbbd
2024-08-17 21:54:21 +02:00
Ricardo Wurmus
2dff160f09
gnu: r-degreport: Update to 1.40.1.
* gnu/packages/bioconductor.scm (r-degreport): Update to 1.40.1.

Change-Id: I35e7284270c81cd10178e7d848dfa5872645405d
2024-08-17 21:54:21 +02:00
Ricardo Wurmus
8d988b6bea
gnu: r-anvil: Update to 1.16.1.
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.16.1.

Change-Id: Ief1b321d44a3bd534c6107c4434957c0de2dd977
2024-08-17 21:54:21 +02:00
Ricardo Wurmus
fdfc106fe0
gnu: r-activepathways: Update to 2.0.5.
* gnu/packages/bioconductor.scm (r-activepathways): Update to 2.0.5.

Change-Id: Ia67d411d6f07bdf3c733f4eab5527f3706f3134d
2024-08-17 21:54:15 +02:00
Ricardo Wurmus
e964ade19c
gnu: r-metap: Update to 1.11.
* gnu/packages/bioconductor.scm (r-metap): Update to 1.11.

Change-Id: I6bf89da4201256ae73206303234a275c011f202d
2024-08-17 21:54:15 +02:00
Ricardo Wurmus
860f763400
gnu: r-tximeta: Update to 1.22.1.
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.22.1.

Change-Id: I213ab8df594f91a9366a9b3fc7498100a264c40f
2024-07-17 22:38:36 +02:00
Ricardo Wurmus
0b1f912ef0
gnu: r-sparsearray: Update to 1.4.8.
* gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.4.8.

Change-Id: I58f280938a8436c9ca4ce16f28195aabb4c61da8
2024-07-17 22:38:36 +02:00
Ricardo Wurmus
1aaf7c961d
gnu: r-s4arrays: Update to 1.4.1.
* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.4.1.

Change-Id: Ic271e88efc4bebf001a34147ab99d5cac76899ab
2024-07-17 22:38:36 +02:00
Ricardo Wurmus
70ce8ee78e
gnu: r-multiassayexperiment: Update to 1.30.2.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.30.2.

Change-Id: Iad9beba82d385c9a9785f243b39238fa7c6cca8c
2024-07-17 22:38:36 +02:00
Ricardo Wurmus
e531a64a61
gnu: r-biocstyle: Update to 2.32.1.
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.32.1.

Change-Id: Ic9b3a8596c64c44930fa591527a67c9d80a3b8e5
2024-07-17 22:38:36 +02:00
Ricardo Wurmus
6ac5e831f0
gnu: r-opencyto: Update to 2.16.1.
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.16.1.

Change-Id: Ica1c5d9cdc5b89fd8d66137deaa37af6405c0e93
2024-07-17 22:38:36 +02:00
Ricardo Wurmus
2d046146a7
gnu: r-xcms: Update to 4.2.2.
* gnu/packages/bioconductor.scm (r-xcms): Update to 4.2.2.

Change-Id: I13a9d324aacd3edc2c9e4f64df68d8efd22a3ca1
2024-07-17 22:38:36 +02:00
Ricardo Wurmus
0ee810eb3b
gnu: r-dose: Update to 3.30.1.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.30.1.

Change-Id: I7839680a6cc3b11083c61c05c392435b985bd522
2024-07-17 22:38:36 +02:00
Ricardo Wurmus
bbdaf10a18
gnu: r-residualmatrix: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.14.1.

Change-Id: Ibeed009e6ae9892dabb90e714c014f5df0748a3d
2024-07-17 22:38:36 +02:00
Ricardo Wurmus
012883f329
gnu: r-goseq: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.56.0.

Change-Id: I96328b6c9ee60f8ecfc218861da8343c15979270
2024-07-17 22:38:36 +02:00
Ricardo Wurmus
52898de521
gnu: r-apeglm: Update to 1.26.1.
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.26.1.

Change-Id: I6feea7900ef40e81cecfa48a6b1bc14ebbafc38c
2024-07-17 22:38:36 +02:00
Ricardo Wurmus
60c809cd0b
gnu: r-qfeatures: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-qfeatures): Update to 1.14.1.
[propagated-inputs]: Add r-reshape2.

Change-Id: Id30163d56abcb36778f32279418c10e63a2866b9
2024-07-17 22:38:36 +02:00
Ricardo Wurmus
3169281f54
gnu: r-oligo: Update to 1.68.2.
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.68.2.

Change-Id: Ieb77c06575edf036355b3cb0085f3dfae8bfb9c5
2024-07-17 22:38:36 +02:00
Ricardo Wurmus
3f87a86b9f
gnu: r-zellkonverter: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.14.1.

Change-Id: I7b50645115df19dc0c1b9ba94c7f4f4e00cf51f5
2024-07-17 22:38:36 +02:00
Ricardo Wurmus
a36b63d144
gnu: r-txdbmaker: Update to 1.0.1.
* gnu/packages/bioconductor.scm (r-txdbmaker): Update to 1.0.1.

Change-Id: Id414fc98b78be2f876c2cc2d1157403f5e7285a6
2024-07-17 22:38:36 +02:00
Ricardo Wurmus
e49bd5772f
gnu: r-stringdb: Update to 2.16.4.
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.16.4.

Change-Id: I0d8f0557d914da617cdf55b180484c08c6bc1e2b
2024-07-17 22:38:36 +02:00
Ricardo Wurmus
160dbc754f
gnu: r-spectra: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-spectra): Update to 1.14.1.

Change-Id: I679be137d79b001c91f2cedc3cf10bb95d517102
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
8aa069af35
gnu: r-sesame: Update to 1.22.2.
* gnu/packages/bioconductor.scm (r-sesame): Update to 1.22.2.
[propagated-inputs]: Remove r-illuminaio.

Change-Id: I9f1d7893351d0396c16f45e01c160534118d2f28
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
b867004a25
gnu: r-mmuphin: Update to 1.18.1.
* gnu/packages/bioconductor.scm (r-mmuphin): Update to 1.18.1.

Change-Id: Ib282af9250fb29e2d40f62b8bf93d9c3fc400a98
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
d72e4d2764
gnu: r-limma: Update to 3.60.3.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.60.3.

Change-Id: Iae5b2769ac2011b1ec185be45f12a180e11cf87b
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
065d781b1c
gnu: r-keggrest: Update to 1.44.1.
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.44.1.

Change-Id: I3aad773f4295755463d293f0bd0770a236a4cf2d
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
b3d41e3268
gnu: r-gypsum: Update to 1.0.1.
* gnu/packages/bioconductor.scm (r-gypsum): Update to 1.0.1.
[propagated-inputs]: Remove r-paws-storage.

Change-Id: I2100aec90f1b3662d21f38d9c3057273c1885f13
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
98cb090e1c
gnu: r-gsva: Update to 1.52.3.
* gnu/packages/bioconductor.scm (r-gsva): Update to 1.52.3.

Change-Id: I7a9f289261890eef5d414f0aee133e4c4defa5ae
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
42787f343d
gnu: r-genomicranges: Update to 1.56.1.
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.56.1.

Change-Id: I547ffe5e04cab142068cc2c6e02008047e382999
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
d803e1bd14
gnu: r-genomeinfodb: Update to 1.40.1.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.40.1.

Change-Id: I8b2c267e45df617d87ec9435f1b0915d131b2870
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
136a454ff2
gnu: r-enmix: Update to 1.40.2.
* gnu/packages/bioconductor.scm (r-enmix): Update to 1.40.2.

Change-Id: I48d2d72ddc6eff87c6416b4dd883acc408ec811d
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
2c6b509327
gnu: r-champ: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-champ): Update to 2.34.0.

Change-Id: Iee7cd3002bb0f17d0f270aa5b1398050574bd539
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
a7fedc7fa0
gnu: r-biostrings: Update to 2.72.1.
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.72.1.

Change-Id: Ic9bb3cb2f7cc5312dc4396211faea3eddab758a2
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
07086a4275
gnu: r-biomart: Update to 2.60.1.
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.60.1.

Change-Id: I03a38932c581f8e6e5d7c4f694aac3f693d52a15
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
68a314d470
gnu: r-dmrcate: Update to 3.0.3.
* gnu/packages/bioconductor.scm (r-dmrcate): Update to 3.0.3.

Change-Id: I5807264b3bb744f292673688e8b45dae816ebafa
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
775fa6631d
gnu: r-delayedarray: Update to 0.30.1.
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.30.1.

Change-Id: I14176f2b7111ce22560ab36f59a950a28c0a14cd
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
1fc6f89cb3
gnu: r-decoupler: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-decoupler): Update to 2.10.0.

Change-Id: I6fbfefb53e907106cf33e6674f984a3e9bbfdf42
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
349925f04b
gnu: r-asics: Update to 2.20.1.
* gnu/packages/bioconductor.scm (r-asics): Update to 2.20.1.

Change-Id: I24dabd37217ba4e904f1f5c7a6f4aed69076a91f
2024-07-17 22:38:35 +02:00