Ricardo Wurmus
|
f8b32e6ec4
|
gnu: r-genomicscores: Update to 2.18.1.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.18.1.
Change-Id: Iae81c63f1b6a56a7f2ef7b2ebac2662b73b552b6
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2025-04-16 11:00:48 +02:00 |
|
Ricardo Wurmus
|
1d53f46cad
|
gnu: r-clusterprofiler: Update to 4.14.4.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.14.4.
Change-Id: Id1e8408483e500a7e43be8a4307c9513e2492bd6
|
2025-04-16 11:00:48 +02:00 |
|
Ricardo Wurmus
|
89d04a5d9d
|
gnu: r-enrichplot: Update to 1.26.6.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.26.6.
Change-Id: Icc5b8b21a3e4c87ec9d822ca4413a3be8cee039e
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2025-04-16 11:00:48 +02:00 |
|
Ricardo Wurmus
|
3499557a79
|
gnu: r-lefser: Update to 1.16.2.
* gnu/packages/bioconductor.scm (r-lefser): Update to 1.16.2.
Change-Id: I235a0fe71ddd82cd92281223f4e0dc3b857a3956
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2025-04-16 11:00:48 +02:00 |
|
Ricardo Wurmus
|
8b95edca0b
|
gnu: r-minfi: Update to 1.52.1.
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.52.1.
[properties]: Record updater-ignored-native-inputs.
Change-Id: I85a8bc4546e046394cee537c002475d858f59fd9
|
2025-04-16 11:00:48 +02:00 |
|
Ricardo Wurmus
|
6b5b0094d4
|
gnu: r-destiny: Update to 3.20.0.
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.20.0.
Change-Id: Ib26b065b17b5aff26e87ce397a2036134e2fafc0
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2025-04-16 11:00:48 +02:00 |
|
Ricardo Wurmus
|
0e7c34ece4
|
gnu: r-biocneighbors: Update to 2.0.1.
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 2.0.1.
Change-Id: I9f3096ff7def4361ab3d4ff5fefe8ebea23ed3e3
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2025-04-16 11:00:48 +02:00 |
|
Ricardo Wurmus
|
f0160fee0e
|
gnu: r-matrixgenerics: Update to 1.18.1.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.18.1.
Change-Id: Idfac54e5388dccac17d27ff3d3273edbd9a0b02e
|
2025-04-16 11:00:48 +02:00 |
|
Ricardo Wurmus
|
8dfca26ff1
|
gnu: r-txdbmaker: Update to 1.2.1.
* gnu/packages/bioconductor.scm (r-txdbmaker): Update to 1.2.1.
[native-inputs]: Remove r-rmariadb and r-runit.
Change-Id: I3838e16f9e93c182be909f022174fb02e14beacc
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2025-04-16 11:00:47 +02:00 |
|
Ricardo Wurmus
|
c0070ea833
|
gnu: r-seqarray: Update to 1.46.2.
* gnu/packages/bioconductor.scm (r-seqarray): Update to 1.46.2.
[native-inputs]: Remove r-digest and r-matrix; add r-biocgenerics.
Change-Id: Ia818a674331eff905bd35f9173d7ab03a5710ed2
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2025-04-16 11:00:47 +02:00 |
|
Ricardo Wurmus
|
50497c5eac
|
gnu: r-scdblfinder: Update to 1.20.2.
* gnu/packages/bioconductor.scm (r-scdblfinder): Update to 1.20.2.
Change-Id: I8dcb740d31d9ba2b6348188a8a01981623801381
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2025-04-16 11:00:47 +02:00 |
|
Ricardo Wurmus
|
8df12acce0
|
gnu: r-rhdf5: Update to 2.50.2.
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.50.2.
[native-inputs]: Add r-mockery.
Change-Id: I0dceb4828e10d90d7a0d567eeee9e3a21e46cb71
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2025-04-16 11:00:47 +02:00 |
|
Ricardo Wurmus
|
090f49bcae
|
gnu: r-mmuphin: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-mmuphin): Update to 1.20.0.
Change-Id: Ibda3299439125a188db636d838e576f1981ca773
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2025-04-16 11:00:47 +02:00 |
|
Ricardo Wurmus
|
d986b2ddd4
|
gnu: r-metagenomeseq: Update to 1.48.1.
* gnu/packages/bioconductor.scm (r-metagenomeseq): Update to 1.48.1.
[native-inputs]: Add r-biomformat and r-gss.
Change-Id: Id848b163e86ce13dcbe2bbb809c48fd99710438b
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2025-04-16 11:00:47 +02:00 |
|
Ricardo Wurmus
|
a5f481d864
|
gnu: r-maaslin2: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.20.0.
Change-Id: I0af7e2421035e5b505e48ad3529d4c9f0f13f83d
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2025-04-16 11:00:47 +02:00 |
|
Ricardo Wurmus
|
88fb80ed7c
|
gnu: r-rpx: Update to 2.14.1.
* gnu/packages/bioconductor.scm (r-rpx): Update to 2.14.1.
Change-Id: I31744b36433d12fc8c27f5490beecb676b1aadb9
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2025-04-16 11:00:46 +02:00 |
|
Ricardo Wurmus
|
1758372884
|
gnu: r-gsva: Update to 2.0.5.
* gnu/packages/bioconductor.scm (r-gsva): Update to 2.0.5.
[native-inputs]: Add r-biocgenerics.
Change-Id: I6f4f1167eea1441269c6ded982bb467c6843e3ed
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2025-04-16 11:00:46 +02:00 |
|
Ricardo Wurmus
|
7c51cc5f18
|
gnu: r-genomicdatacommons: Update to 1.30.1.
* gnu/packages/bioconductor.scm (r-genomicdatacommons): Update to 1.30.1.
Change-Id: I970e883a37e1cf61f0339e809c3e00765a05ac11
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2025-04-16 11:00:46 +02:00 |
|
Ricardo Wurmus
|
32b6b8b816
|
gnu: r-edger: Update to 4.4.2.
* gnu/packages/bioconductor.scm (r-edger): Update to 4.4.2.
Change-Id: Ie9698d16415f11cd828bbf9246886674a3038ea1
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2025-04-16 11:00:46 +02:00 |
|
Ricardo Wurmus
|
ef7f07fe1f
|
gnu: r-diffcyt: Update to 1.26.1.
* gnu/packages/bioconductor.scm (r-diffcyt): Update to 1.26.1.
Change-Id: I7104897619935d49c48f43b8d680af3f7c774198
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2025-04-16 11:00:46 +02:00 |
|
Ricardo Wurmus
|
37848c6e93
|
gnu: r-chipseeker: Update to 1.42.1.
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.42.1.
Change-Id: I67ed931c9067bbfa4b522431551fa402d97ede20
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2025-04-16 11:00:46 +02:00 |
|
Ricardo Wurmus
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d5fb534a68
|
gnu: r-biostrings: Update to 2.74.1.
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.74.1.
[native-inputs]: Add r-runit.
Change-Id: I4deaa320686f43f78028ff1b90cc80da59d44472
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2025-04-16 11:00:46 +02:00 |
|
Ricardo Wurmus
|
8a9a250138
|
gnu: r-biomart: Update to 2.62.1.
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.62.1.
Change-Id: Id5e7b53e82f1322e3c4e3c06f8523955c6e038a6
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2025-04-16 11:00:46 +02:00 |
|
Ricardo Wurmus
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f9fbbdb46d
|
gnu: r-iranges: Update to 2.40.1.
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.40.1.
Change-Id: I3c3b055fdc12082a57e7aa297b858030898695cd
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2025-04-16 11:00:45 +02:00 |
|
Ricardo Wurmus
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e3e68d9f3b
|
gnu: r-dmrcate: Update to 3.2.1.
* gnu/packages/bioconductor.scm (r-dmrcate): Update to 3.2.1.
[native-inputs]: Remove r-runit.
Change-Id: I10df7ead9b5c74994634b782950ab62abe5ed8ce
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2025-04-16 11:00:45 +02:00 |
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Ricardo Wurmus
|
3c06941716
|
gnu: r-bambu: Update to 3.8.3.
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.8.3.
[native-inputs]: Add r-annotationdbi, r-ggplot2, and r-purrr.
Change-Id: Ibe8f09fd15d58ee854cc452317c469af6ff4ea1c
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2025-04-16 11:00:45 +02:00 |
|
Ricardo Wurmus
|
61931aa761
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gnu: r-assorthead: Update to 1.0.1.
* gnu/packages/bioconductor.scm (r-assorthead): Update to 1.0.1.
Change-Id: I891185025aa58ce9e39926419285f606826eacec
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2025-04-16 11:00:45 +02:00 |
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Ricardo Wurmus
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5c47ee149a
|
gnu: r-anvil: Update to 1.18.4.
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.18.4.
[native-inputs]: Add r-anvilgcp and r-withr.
Change-Id: Ic8585f256f80ddd976620887bafc655faa6d27db
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2025-04-16 11:00:45 +02:00 |
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Ricardo Wurmus
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2ea3b3f14a
|
gnu: r-ancombc: Update to 2.8.1.
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.8.1.
[native-inputs]: Remove r-microbiome; add r-phyloseq.
Change-Id: I9907d355e7b7436df3c6f09108a803f78c145bef
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2025-04-16 11:00:45 +02:00 |
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Ricardo Wurmus
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3924708c93
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gnu: r-alabaster-matrix: Update to 1.6.1.
* gnu/packages/bioconductor.scm (r-alabaster-matrix): Update to 1.6.1.
[native-inputs]: Add r-biocsingular and r-residualmatrix.
Change-Id: Idf0cdee9904bc3424402712fb7d5d699365d4297
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2025-04-16 11:00:45 +02:00 |
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Ricardo Wurmus
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86adb1a0b3
|
gnu: r-parathyroidse: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-parathyroidse): Update to 1.44.0.
Change-Id: I649e47c29c1fed9f8582843f7564d03cbd948c1e
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2025-04-16 11:00:45 +02:00 |
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Ricardo Wurmus
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adf4474c63
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gnu: r-curatedtcgadata: Update to 1.28.1.
* gnu/packages/bioconductor.scm (r-curatedtcgadata): Update to 1.28.1.
Change-Id: I7b6641c38e1f8da3e11ba8febce9a0e9e1492614
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2025-04-16 11:00:44 +02:00 |
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Ricardo Wurmus
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37954570ae
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gnu: r-prolocdata: Update to 1.44.1.
* gnu/packages/bioconductor.scm (r-prolocdata): Update to 1.44.1.
Change-Id: I8f6d526c5b7128f97df3685301e018dd3990641f
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2025-04-16 11:00:44 +02:00 |
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Ricardo Wurmus
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933eb9e7c2
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gnu: r-rbowtie2: Update to 2.12.3.
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.12.3.
[inputs]: Remove zlib.
[native-inputs]: Remove r-testthat.
Change-Id: Ia7c56570162694c4768ecc93715602665a0e0651
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2025-04-16 11:00:44 +02:00 |
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Ricardo Wurmus
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a3427458e3
|
gnu: r-ncdfflow: Update to 2.52.1.
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.52.1.
[propagated-inputs]: Remove r-zlibbioc.
[native-inputs]: Add r-devtools.
Change-Id: I1d73662e335bb516574a65155c6d96eb7fe2d9a2
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2025-04-16 11:00:44 +02:00 |
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Ricardo Wurmus
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f1106337ec
|
gnu: r-gdsfmt: Update to 1.42.1.
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.42.1.
[properties]: Record updater-extra-native-inputs.
Change-Id: Ibcea9f259f8bf1ae1fc8eedd64f2942c98785dcd
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2025-04-16 11:00:44 +02:00 |
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Ricardo Wurmus
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60bed6ded7
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gnu: r-escape: Move away from Annotation section.
* gnu/packages/bioconductor.scm (r-escape): Move.
Change-Id: I7a993f4980f24592862554f7af43d9cf82f0e16c
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2025-04-16 11:00:44 +02:00 |
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Ricardo Wurmus
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59ed7fb128
|
gnu: r-escape: Update to 2.2.3.
* gnu/packages/bioconductor.scm (r-escape): Update to 2.2.3.
[native-inputs]: Add r-rlang, r-spelling, and r-vdiffr.
Change-Id: Ib36124fd137d1920321afe9a118f071e9abf664e
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2025-04-16 11:00:44 +02:00 |
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Ricardo Wurmus
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db36f1ce56
|
gnu: r-delayedmatrixstats: Update to 1.28.1.
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.28.1.
[properties]: Record updater-extra-native-inputs.
[native-inputs]: Add r-matrixstats.
Change-Id: I835b69abf29b224be86663a1e5eb382342de0723
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2025-04-16 11:00:44 +02:00 |
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Ricardo Wurmus
|
50011cc810
|
gnu: r-graph: Update to 1.84.1.
* gnu/packages/bioconductor.scm (r-graph): Update to 1.84.1.
[properties]: Record updater-extra-native-inputs.
[native-inputs]: Add r-multigraph.
Change-Id: Iaca8cbc0afa18ca93c0229bd3552e34cd0ba38c0
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2025-04-16 11:00:43 +02:00 |
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Ricardo Wurmus
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b42608c36f
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gnu: r-limma: Update to 3.62.2.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.62.2.
[properties]: Record updater-extra-native-inputs.
Change-Id: I9bb458a24d16b9695fb401a7dca3d5dbd11d18f0
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2025-04-16 11:00:43 +02:00 |
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Ricardo Wurmus
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e45ffc2f07
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gnu: r-genomeinfodb: Update to 1.42.3.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.42.3.
[properties]: Record updater-ignored-native-inputs.
Change-Id: I823a2dbd187381adee79fcc941e133a6171f4cc6
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2025-04-16 11:00:43 +02:00 |
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Ricardo Wurmus
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2fcb750fec
|
gnu: Add r-csaw.
* gnu/packages/bioconductor.scm (r-csaw): New variable.
Change-Id: I6585c4e5d30b6ae549ece27a1fea63400bf65c30
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2025-04-16 11:00:43 +02:00 |
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Ricardo Wurmus
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e3c8415009
|
gnu: Add r-rcistarget-hg19-motifdbs-cisbponly-500bp.
* gnu/packages/bioconductor.scm (r-rcistarget-hg19-motifdbs-cisbponly-500bp): New variable.
Change-Id: Ifc972c69d1a38bc935203faba74d7ca35ca65498
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2025-04-16 11:00:43 +02:00 |
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Ricardo Wurmus
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4aa6264468
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gnu: Add r-helloranges.
* gnu/packages/bioconductor.scm (r-helloranges): New variable.
Change-Id: I18c7cb9ff0011647ba68744373444788c4743849
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2025-04-16 11:00:43 +02:00 |
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Ricardo Wurmus
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a814243b36
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gnu: Add r-hellorangesdata.
* gnu/packages/bioconductor.scm (r-hellorangesdata): New variable.
Change-Id: I18f8c30ee0d41fef96762dd59dfa20aa37e2d72b
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2025-04-16 11:00:43 +02:00 |
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Ricardo Wurmus
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9ef5446bb7
|
gnu: Add r-bsgenome-drerio-ucsc-danrer10.
* gnu/packages/bioconductor.scm (r-bsgenome-drerio-ucsc-danrer10): New variable.
Change-Id: I7d8ec96702e1d370547e91bb168f5621a87906d3
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2025-04-16 11:00:42 +02:00 |
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Ricardo Wurmus
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7f18a8a721
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gnu: Add r-chihaya.
* gnu/packages/bioconductor.scm (r-chihaya): New variable.
Change-Id: Ic4a518d05532d00b5909ad4c2c84933dd5f58401
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2025-04-16 11:00:42 +02:00 |
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Ricardo Wurmus
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eb85e6430a
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gnu: Add r-anvilgcp.
* gnu/packages/bioconductor.scm (r-anvilgcp): New variable.
Change-Id: I82bcd1a276c8d6290b870fe81ac743e8ab0b1184
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2025-04-16 11:00:42 +02:00 |
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Ricardo Wurmus
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4b4b58b79a
|
gnu: Add r-txdb-dmelanogaster-ucsc-dm3-ensgene.
* gnu/packages/bioconductor.scm (r-txdb-dmelanogaster-ucsc-dm3-ensgene): New variable.
Change-Id: I5555a99f9849106c0741121320e5e90b37bae752
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2025-04-16 11:00:42 +02:00 |
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