gnu: Add tenmon.

* gnu/packages/astronomy.scm (tenmon, libxisf-for-tenmon): New
variables.

Change-Id: I0398fe657aa944883d1160265fe0113a0ae24ab0

gnu/local.mk

@@ -991,7 +991,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/antiword-CVE-2014-8123.patch			\
   %D%/packages/patches/antlr3-3_1-fix-java8-compilation.patch	\
   %D%/packages/patches/antlr3-3_3-fix-java8-compilation.patch	\
-  %D%/packages/patches/aoflagger-use-system-provided-pybind11.patch \
   %D%/packages/patches/apr-fix-atomics.patch			\
   %D%/packages/patches/apr-skip-getservbyname-test.patch	\
   %D%/packages/patches/aria-maestosa-scons-python3.patch	\

gnu/packages/emacs.scm

@@ -744,7 +744,12 @@ Started in 2014 as a GSOC project, Guile-Emacs was resurrected in 2024.")
        (substitute-keyword-arguments `(#:strip-binaries? #f
                                        ,@(package-arguments emacs))
          ((#:configure-flags flags ''())
-          #~`("CFLAGS=-Og -ggdb3"
+          #~`(#$(string-append "CFLAGS=-Og -ggdb3"
+                               " -Wno-error=implicit-function-declaration"
+                               " -Wno-error=implicit-int"
+                               " -Wno-error=incompatible-pointer-types"
+                               " -Wno-error=int-conversion"
+                               " -Wno-error=shift-count-negative")
               "--with-native-compilation=no"
               "--without-modules"
               "--without-threads"
@@ -752,7 +757,9 @@ Started in 2014 as a GSOC project, Guile-Emacs was resurrected in 2024.")
               "--without-cairo"
               "--without-tree-sitter"
               "--with-imagemagick"
-              ,@(fold delete #$flags '("--with-cairo"
+              ,@(fold delete #$flags
+                      '("CFLAGS=-g -O2 -Wno-error=incompatible-pointer-types"
+                        "--with-cairo"
                         "--with-modules"
                         "--with-native-compilation=aot"))))
          ((#:make-flags flags #~'())

gnu/packages/patches/aoflagger-use-system-provided-pybind11.patch

@@ -1,38 +0,0 @@
-This patch was borrowed from Debian's package:
-https://salsa.debian.org/debian-astro-team/aoflagger/-/blob/0484ef75a663e3e07738550cdade46f433a53dac/debian/patches/Use-system-provided-pybind11.patch
-Description: Use system provided pybind11
-Author: Ole Streicher <olebole@debian.org>
-Origin: Debian
-Last-Update: Mon, 30 Aug 2021 11:05:37 +0200
----
- CMakeLists.txt | 10 +++++-----
- 1 file changed, 5 insertions(+), 5 deletions(-)
-
-diff --git a/CMakeLists.txt b/CMakeLists.txt
-index 655ea5e..824ee2a 100644
---- a/CMakeLists.txt
-+++ b/CMakeLists.txt
-@@ -62,11 +62,6 @@ foreach(ExternalSubmodule IN LISTS ExternalSubmoduleDirectories)
-   endif()
- endforeach()
- 
--# Include aocommon/pybind11 headers
--include_directories("${CMAKE_SOURCE_DIR}/external/aocommon/include")
--add_subdirectory("${CMAKE_SOURCE_DIR}/external/pybind11")
--include_directories(SYSTEM ${pybind11_INCLUDE_DIR})
--
- find_package(
-   HDF5
-   COMPONENTS C CXX
-@@ -101,6 +96,11 @@ find_package(PythonInterp REQUIRED)
- message(STATUS "Using python version ${PYTHON_VERSION_STRING}")
- include_directories(SYSTEM ${PYTHON_INCLUDE_DIRS})
- 
-+# Include pybind11 headers
-+find_package(pybind11 REQUIRED)
-+include_directories("${CMAKE_SOURCE_DIR}/external/aocommon/include")
-+include_directories(${pybind11_INCLUDE_DIR})
-+
- # boost::alignment requires Boost 1.56
- find_package(Boost 1.56.0 REQUIRED COMPONENTS date_time filesystem system
-                                               unit_test_framework)

gnu/packages/prolog.scm

@@ -185,7 +185,7 @@ it.")
 (define-public trealla
   (package
     (name "trealla")
-    (version "2.83.5")
+    (version "2.83.8")
     (source
      (origin
        (method git-fetch)
@@ -194,7 +194,7 @@ it.")
          (url "https://github.com/trealla-prolog/trealla")
          (commit (string-append "v" version))))
        (sha256
-        (base32 "04d1h8331dsb1gbrp28h2sqkwqh3cfzbdlziczwqk2kyyp9sf9f8"))
+        (base32 "1bpfzrwsgbmjl1maiaw5b8ixkgh548gw1lkiznsjgkjm7dxr4ns4"))
        (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (native-inputs

gnu/packages/python-check.scm

@@ -1777,6 +1777,31 @@ data arrays produced during tests, in particular in cases where the arrays
 are too large to conveniently hard-code them in the tests.")
     (license license:bsd-3)))
 
+(define-public python-pytest-asdf-plugin
+  (package
+    (name "python-pytest-asdf-plugin")
+    (version "0.1.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "pytest_asdf_plugin" version))
+       (sha256
+        (base32 "0bcfl1s7yrnr2rlpr3hswcg9jyq6gnj0ppmpzppw9xgj796ycfb5"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list #:tests? #f         ;to avoid import astronomy module
+           #:phases
+           #~(modify-phases %standard-phases
+               (delete 'sanity-check))))
+    (native-inputs
+     (list python-setuptools-next
+           python-setuptools-scm-next))
+    (home-page "https://github.com/asdf-format/pytest-asdf-plugin")
+    (synopsis "Pytest plugin for testing ASDF schemas")
+    (description
+     "This package provides a Pytest plugin for testing ASDF schemas.")
+    (license license:bsd-3)))
+
 (define-public python-pytest-astropy
   (package
     (name "python-pytest-astropy")

gnu/packages/version-control.scm

@@ -4224,7 +4224,11 @@ will reconstruct the object along its delta-base chain and return it.")
                              (install-file manpage
                                            (string-append #$output "/share/man/man1")))
                            (find-files "." "^git-lfs.*\\.1$"))))))
-                 #~()))))
+                 #~())
+          (add-after 'install 'rename-binary
+            (lambda _
+              (with-directory-excursion (string-append #$output "/bin")
+                (rename-file "v3" "git-lfs")))))))
     (native-inputs
      (append (list git-minimal
                    go-github-com-avast-retry-go
@@ -4251,7 +4255,7 @@ will reconstruct the object along its delta-base chain and return it.")
              (if (supported-package? ruby-asciidoctor/minimal)
                  (list ronn-ng ruby-asciidoctor/minimal)
                  '())))
-    (home-page "https://git-lfs.github.com/")
+    (home-page "https://git-lfs.com/")
     (synopsis "Git extension for versioning large files")
     (description
      "Git Large File Storage (LFS) replaces large files such as audio samples,