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* gnu/packages/bioinformatics.scm (mash): Update to 2.3.
[arguments]<#:phases>{fix-includes}: Add file to substitutions.
* gnu/packages/patches/mash-add-missing-headers.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register new file.
Fixes: guix/guix#2986
Change-Id: I6a37a6b65b0abe9b72663bcafbc034dac0cff0c0
Signed-off-by: Andreas Enge <andreas@enge.fr>
26 lines
No EOL
669 B
Diff
26 lines
No EOL
669 B
Diff
https://patch-diff.githubusercontent.com/raw/marbl/Mash/pull/181.diff
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Add missing includes to support newer compilers.
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---
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diff --git a/src/mash/robin_hood.h b/src/mash/robin_hood.h
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index 573607f..9141848 100644
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--- a/src/mash/robin_hood.h
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+++ b/src/mash/robin_hood.h
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@@ -42,6 +42,7 @@
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#include <cstdlib>
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#include <cstring>
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#include <functional>
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+#include <limits>
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#include <memory> // only to support hash of smart pointers
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#include <stdexcept>
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#include <string>
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--- a/src/mash/Command.cpp
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+++ b/src/mash/Command.cpp
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@@ -8,6 +8,7 @@
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#include <sys/ioctl.h>
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#include <sstream>
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#include <fstream>
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+#include <cstdint>
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#include "Command.h"
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#include "version.h"
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