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guix-mirrors/gnu/packages/python-compression.scm
Nicolas Graves 0f7eb28b67
gnu: python-isal: Set unittest test-backend. 
* gnu/packages/python-compression.scm (python-isal)
[source]<snippet>: Improve style, use G-expressions.
[arguments]<#:test-backend>: Set it.
<#:phases>: Improve style.

Change-Id: I8d05af8720f6fcd31aae0b83a70efc8dfd6e4e9f
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-09-20 19:27:03 +01:00

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;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2017, 2018, 2023 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2017, 2019, 2021, 2022 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2017 Nikita <nikita@n0.is>
;;; Copyright © 2017 Julien Lepiller <julien@lepiller.eu>
;;; Copyright © 2018-2020, 2022, 2023 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2020 Nicolas Goaziou <mail@nicolasgoaziou.fr>
;;; Copyright © 2020, 2022, 2023 Marius Bakke <marius@gnu.org>
;;; Copyright © 2021 Brendan Tildesley <mail@brendan.scot>
;;; Copyright © 2023, 2024 Troy Figiel <troy@troyfigiel.com>
;;; Copyright © 2024 TakeV <takev@disroot.org>
;;; Copyright © 2023 Ivan Vilata i Balaguer <ivan@selidor.net>
;;; Copyright © 2024 Maxim Cournoyer <maxim@guixotic.coop>
;;; Copyright © 2025 Nicolas Graves <ngraves@ngraves.fr>
;;; Copyright © 2025 Vinicius Monego <monego@posteo.net>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu packages python-compression)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix utils)
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix git-download)
#:use-module (guix gexp)
#:use-module (guix build-system cargo)
#:use-module (guix build-system gnu)
#:use-module (guix build-system python)
#:use-module (guix build-system pyproject)
#:use-module (gnu packages)
#:use-module (gnu packages libffi)
#:use-module (gnu packages compression)
#:use-module (gnu packages cmake)
#:use-module (gnu packages check)
#:use-module (gnu packages maths)
#:use-module (gnu packages ninja)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
#:use-module (gnu packages python-build)
#:use-module (gnu packages python-check)
#:use-module (gnu packages python-crypto)
#:use-module (gnu packages python-science)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages rust)
#:use-module (gnu packages rust-apps)
#:use-module (gnu packages sphinx))
(define-public python-blosc
(package
(name "python-blosc")
(version "1.11.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "blosc" version))
(sha256
(base32
"13h8ks58iy4h3ayk7havb4hmkma88598qkf4i4paj53qpa76bvc9"))
(snippet
#~(begin (use-modules (guix build utils))
(delete-file-recursively "blosc/c-blosc")))))
(build-system pyproject-build-system)
(arguments
(list
#:test-backend #~'custom
#:test-flags #~(list "-m" "blosc.test")
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'find-blosc
(lambda _
(setenv "USE_SYSTEM_BLOSC" "1")
(setenv "Blosc_ROOT" #$(this-package-input "c-blosc")))))))
(propagated-inputs
(list python-scikit-build))
(inputs
(list c-blosc))
(native-inputs
(list cmake-minimal
ninja/pinned
python-numpy
python-psutil
python-py-cpuinfo
python-setuptools))
(home-page "https://github.com/blosc/python-blosc")
(synopsis "Python wrapper for the Blosc data compressor library")
(description "Blosc is a high performance compressor optimized for binary
data. It has been designed to transmit data to the processor cache faster
than the traditional, non-compressed, direct memory fetch approach via a
@code{memcpy()} system call.
Blosc works well for compressing numerical arrays that contains data with
relatively low entropy, like sparse data, time series, grids with
regular-spaced values, etc.
This Python package wraps the Blosc library.")
(license license:bsd-3)))
(define-public python-blosc2
(package
(name "python-blosc2")
(version "2.7.1") ;3.0.0 requires numpy>=1.25
(source
(origin
(method url-fetch)
(uri (pypi-uri "blosc2" version))
(sha256
(base32 "1s4gpdf1hfbw5w3hpx0g8bfwjrws1b8wgmh7snafh5ivai0lvnrl"))))
(build-system pyproject-build-system)
(arguments
(list
#:test-flags
#~(list "--pyargs" "blosc2")
#:phases
#~(modify-phases %standard-phases
(add-before 'build 'configure
(lambda _
(setenv "USE_SYSTEM_BLOSC2" "ON"))))))
(inputs (list c-blosc2))
(propagated-inputs
(list python-msgpack
python-ndindex
python-numexpr
python-numpy
python-py-cpuinfo))
(native-inputs
(list cmake-minimal
pkg-config
python-cython-3
python-pytest
python-scikit-build
python-setuptools))
(home-page "https://github.com/blosc/python-blosc2")
(synopsis "Python wrapper for the Blosc2 data compressor library")
(description
"Blosc2 is a high performance compressor optimized for binary
data. It has been designed to transmit data to the processor cache faster
than the traditional, non-compressed, direct memory fetch approach via a
@code{memcpy()} system call.
Python-Blosc2 wraps the C-Blosc2 library, and it aims to leverage its new API
so as to support super-chunks, multi-dimensional arrays, serialization and
other features introduced in C-Blosc2.
Python-Blosc2 also reproduces the API of Python-Blosc and is meant to be able
to access its data, so it can be used as a drop-in replacement.")
(license license:bsd-3)))
(define-public python-brotli
(package
(name "python-brotli")
(version "1.0.9")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/google/brotli")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "1fikasxf7r2dwlk8mv8w7nmjkn0jw5ic31ky3mvpkdzwgd4xfndl"))
(modules '((guix build utils)))
(snippet
#~(begin
;; Cherry-picked from upstream since the latest release
;; https://github.com/google/brotli/commit/09b0992b6acb7faa6fd3b23f9bc036ea117230fc
(substitute* (find-files "scripts" "^lib.*pc\\.in")
(("-R\\$\\{libdir\\} ") ""))))))
(build-system pyproject-build-system)
(native-inputs
(list python-pytest
python-setuptools))
(home-page "https://github.com/google/brotli")
(synopsis "Python interface to Brotli")
(description "This package provides a Python interface to the @code{brotli}
package, an implementation of the Brotli lossless compression algorithm.")
(license license:expat)))
(define-public python-google-brotli
(deprecated-package "python-google-brotli" python-brotli))
(define-public python-multivolumefile
(package
(name "python-multivolumefile")
(version "0.2.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "multivolumefile" version))
(sha256
(base32
"1mh9sz50s1p8ik83a455pqd57syprad7xhfmk28yb5mwmw58sr50"))))
(build-system pyproject-build-system)
(native-inputs
(list python-setuptools-scm
python-coverage
python-coveralls
python-hypothesis
python-pytest
python-pytest-cov
python-setuptools
python-wheel))
(home-page "https://github.com/miurahr/multivolume")
(synopsis "Treat multiple files as one")
(description "MultiVolumefile is a Python library that provides a
file-object abstraction, making it possible to use multiple files as if they
were a single file.")
(license license:lgpl2.1+)))
(define-public python-cramjam
(package
(name "python-cramjam")
(version "2.10.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "cramjam" version))
(sha256
(base32 "12kdwr313b8w8il4x1y9z366armd6lqv3hvpx4281bl4fd4ds8g8"))))
(build-system pyproject-build-system)
(arguments
(list
#:imported-modules `(,@%cargo-build-system-modules
,@%pyproject-build-system-modules)
#:modules '(((guix build cargo-build-system) #:prefix cargo:)
(guix build pyproject-build-system)
(guix build utils))
#:phases #~(modify-phases %standard-phases
(add-after 'unpack 'prepare-cargo-build-system
(lambda args
(for-each
(lambda (phase)
(format #t "Running cargo phase: ~a~%" phase)
(apply (assoc-ref cargo:%standard-phases phase)
#:cargo-target #$(cargo-triplet)
args))
'(unpack-rust-crates
configure
check-for-pregenerated-files
patch-cargo-checksums)))))))
(native-inputs
(append
(list maturin
pkg-config
python-pytest
python-pytest-xdist
python-numpy
python-hypothesis
rust
`(,rust "cargo"))
(or (and=> (%current-target-system)
(compose list make-rust-sysroot))
'())))
(inputs
(cons* libdeflate
lz4
`(,zstd "lib")
(cargo-inputs 'python-cramjam)))
(home-page "https://github.com/milesgranger/cramjam")
(synopsis "Python bindings to compression algorithms in Rust")
(description
"This package provides thin Python bindings to compression and
decomporession algorithms implemented in Rust. This allows for using
algorithms such as Snappy without additional system dependencies. The
following algorithms are available:
@itemize
@item Snappy
@item Brotli
@item Bzip2
@item LZ4
@item Gzip
@item Deflate
@item Zstd
@end itemize")
(license license:expat)))
(define-public python-ewah-bool-utils
(package
(name "python-ewah-bool-utils")
(version "1.2.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "ewah_bool_utils" version))
(sha256
(base32 "1hvs1fvf3g7kq6hnzxyxfrwvmykw503cmxf1l3irs67gr931z47b"))))
(build-system pyproject-build-system)
(arguments
(list
#:phases
#~(modify-phases %standard-phases
(add-before 'check 'build-extensions
(lambda _
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
(native-inputs
(list python-cython
python-pytest
python-setuptools
python-wheel))
(propagated-inputs
(list python-numpy))
(home-page "https://github.com/yt-project/ewah_bool_utils")
(synopsis "EWAH Bool Array compression")
(description "This package provide a Python wrapper to @acronym{EWAH,
Enhanced Word-Aligned Hybrid} compression bitarray method.")
(license (list
;; LICENSE: for Python code.
license:bsd-3
;; XXX: Check if it's possible to have it as a dedicated package
;; and link here..
;; ewah_bool_utils/cpp/LICENSE: for C++ bundle, sourced from
;; <https://github.com/lemire/EWAHBoolArray>.
license:asl2.0))))
(define-public python-pybcj
(package
(name "python-pybcj")
(version "1.0.1")
(source (origin
(method url-fetch)
(uri (pypi-uri "pybcj" version))
(sha256
(base32
"1hvm3c3mb20z25kmbzyyn6pr5inx50z0ignl8b0bggxaik82ws4b"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-importlib-metadata))
(native-inputs
(list python-coverage
python-hypothesis
python-pytest
python-pytest-cov
python-setuptools-scm
python-setuptools
python-wheel))
(home-page "https://codeberg.org/miurahr/pybcj")
(synopsis "BCJ filter library")
(description "In data compression, BCJ, short for Branch-Call-Jump, refers
to a technique that improves the compression of machine code of executable
binaries by replacing relative branch addresses with absolute ones. This
allows a LZMA compressor to identify duplicate targets and archive higher
compression rate. BCJ is used in the 7-zip compression utility as the default
filter for executable binaries.
pybcj provides Python bindings to a BCJ implementation in C.")
(license license:lgpl2.1+)))
(define-public python-bcj-cffi
(package
(name "python-bcj-cffi")
(version "0.5.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "bcj-cffi" version))
(sha256
(base32
"1jcczrb8zgg6w7v76w1wpz3nw75fghk3xwxkn09ll7kck7sdf68d"))))
(build-system python-build-system)
(propagated-inputs
(list python-cffi python-toml python-setuptools-scm))
(native-inputs
(list python-setuptools python-coverage python-pytest
python-pytest-cov))
(home-page "https://github.com/miurahr/bcj-cffi")
(synopsis "Branch / Call /Jump CFFI library in Python")
(description "This package provides an implementation of the Branch / Call /
Jump conversion filter by CFFI for Python.")
(license license:lgpl2.1+)))
(define-public python-brotlicffi
(package
(name "python-brotlicffi")
(version "1.0.9.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "brotlicffi" version))
(sha256
(base32 "15kxgdiqcg0cm6h5xq3vkbhw7674673hcx3n2yicd3wx29l8l90c"))
(snippet
#~(begin
(use-modules (guix build utils))
(delete-file-recursively "libbrotli")))))
(build-system pyproject-build-system)
(arguments
(list
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'use-shared-brotli
(lambda _
(setenv "USE_SHARED_BROTLI" "1")))
(add-before 'check 'set-brotli-source
(lambda _
(let* ((brotli-source
#+(package-source (this-package-input "brotli")))
(brotli-test-data
(string-append brotli-source "/tests/testdata"))
(brotli-version-source
(string-append brotli-source "/c/common/version.h")))
(substitute* "test/conftest.py"
(("TEST_DATA_DIR = .*")
(format #f "TEST_DATA_DIR = ~s~%" brotli-test-data)))
(substitute* "test/test_compatibility.py"
(("open\\(version_h\\)")
(format #f "open(~s)" brotli-version-source)))))))))
(native-inputs
(list python-pytest
python-setuptools
python-wheel))
(inputs
(list brotli))
(propagated-inputs
(list python-cffi))
(home-page "https://github.com/python-hyper/brotlicffi")
(synopsis "Python CFFI bindings to the Brotli library")
(description
"This package provides Python CFFI bindings to the Brotli library.")
(license license:expat)))
(define-public python-inflate64
(package
(name "python-inflate64")
(version "0.3.1")
(source (origin
(method url-fetch)
(uri (pypi-uri "inflate64" version))
(sha256
(base32
"0767j35gkwaykl1iq9qn8rc25j1ggv56x3d1vzjpk89bzpzdhbdm"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-importlib-metadata))
(native-inputs
(list python-pytest
python-setuptools-scm
python-setuptools
python-wheel))
(home-page "https://pypi.org/project/inflate64/")
(synopsis "Compression/decompression library")
(description "The @code{inflate64} package provides @code{Deflater} and
@code{Inflater} classes to compress and decompress with the Enhanced Deflate
compression algorithm.")
(license license:lgpl2.1+)))
(define-public python-isal
(package
(name "python-isal")
(version "1.1.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "isal" version))
(sha256
(base32 "01914gwfrb95dagz9sqnsmvc0hssg2pb6aj204fdamss4piz8r0k"))
;; Remove bundled isa-l source code
(modules '((guix build utils)))
(snippet
#~(delete-file-recursively "src/isal/isa-l"))))
(build-system pyproject-build-system)
(arguments
(list
#:test-backend #~'unittest
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'use-dynamic-linking
(lambda _
(setenv "PYTHON_ISAL_LINK_DYNAMIC" "1"))))))
(inputs (list isa-l))
(native-inputs (list python-cython python-setuptools python-wheel))
(home-page "https://github.com/pycompression/python-isal")
(synopsis "Python bindings for the ISA-L compression library")
(description
"This package aims to provide faster zlib and gzip compatible compression
and decompression by implementing Python bindings for the ISA-L library.")
(license license:expat)))
(define-public python-pylsqpack
(package
(name "python-pylsqpack")
(version "0.3.22")
(source (origin
(method url-fetch)
(uri (pypi-uri "pylsqpack" version))
(sha256
(base32
"1npcdj416gqc5zvlkyh9z808k381lrm56zvz1zsdjw437hdp2zxn"))))
;; FIXME: Unbundle ls-qpack and xxhash!
(build-system pyproject-build-system)
(native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/aiortc/pylsqpack")
(synopsis "Python bindings for @code{ls-qpack}")
(description
"@code{pylsqpack} is a wrapper around the @code{ls-qpack} library.
It provides Python Decoder and Encoder objects to read or write HTTP/3
headers compressed with QPACK.")
(license license:expat)))
(define-public python-pyppmd
(package
(name "python-pyppmd")
(version "1.0.0")
(source (origin
(method url-fetch)
(uri (pypi-uri "pyppmd" version))
(sha256
(base32
"03w4x26mar0ha73c3v39psn1i0k6xrzwmaxfsxysic73jz99np07"))))
(build-system pyproject-build-system)
(native-inputs
(list python-coverage
python-hypothesis
python-pytest
python-pytest-benchmark
python-pytest-cov
python-pytest-timeout
python-setuptools-scm
python-setuptools
python-wheel))
(home-page "https://github.com/miurahr/pyppmd")
(synopsis "PPMd compression/decompression library")
(description "Pyppmd provides classes and functions for compressing and
decompressing text data, using the @dfn{Prediction by partial matching} (PPM)
compression algorithm variation H and I.2. It provides an API similar to
Python's zlib/bz2/lzma modules.")
(license license:lgpl2.1+)))
(define-public python-ppmd-cffi
(package
(name "python-ppmd-cffi")
(version "0.5.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "ppmd-cffi" version))
(sha256
(base32
"0vprpl29fkflqx0m6anfpx7q7i4cw0d0qxcdm91k4pl82dcad81g"))))
(build-system python-build-system)
(propagated-inputs
(list python-cffi))
(native-inputs
(list python-hypothesis
python-setuptools-scm
python-coverage
python-pytest
python-pytest-cov))
(home-page "https://github.com/miurahr/ppmd")
(synopsis "Prediction by Partial Matching compression library")
(description "PPMd is a compression algorithm library using the Prediction
by Partial Matching statistical technique. It is used in RAR and 7-Zip as one of
several possible methods.")
(license license:lgpl2.1+)))
(define-public python-py7zr
(package
(name "python-py7zr")
(version "0.20.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "py7zr" version))
(sha256
(base32
"0lwniinfr3rb10n0c203a09vz06vxnnj637yqn8ipdlml89gj7kr"))))
(build-system pyproject-build-system)
(arguments
(list
#:test-flags
#~(list "--ignore=tests/test_benchmark.py")))
(propagated-inputs
(list python-brotli
python-brotlicffi
python-importlib-metadata
python-inflate64
python-multivolumefile
python-psutil
python-pybcj
python-pycryptodomex
python-pyppmd
python-pyzstd
python-texttable))
(native-inputs
(list python-setuptools
python-libarchive-c
python-py-cpuinfo
python-pyannotate
python-pytest
python-pytest-benchmark
python-pytest-remotedata
python-pytest-timeout
python-setuptools-scm
python-wheel))
(home-page "https://github.com/miurahr/py7zr")
(synopsis "7-zip in Python")
(description "This package provides py7zr, which implements 7-zip
archive compression, decompression, encryption and decryption in
Python.")
(license license:lgpl2.1+)))
(define-public python-lzo
(package
(name "python-lzo")
(version "1.15")
(source
(origin
(method url-fetch)
(uri (pypi-uri "python-lzo" version))
(sha256
(base32 "0jbv6853p8flk65ks0nw37f6f5v0ryi6nhppv5fm3863ql0alym5"))))
(build-system pyproject-build-system)
(arguments
(list
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'patch-setuppy
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "setup.py"
(("include_dirs.append\\(.*\\)")
(format #f "include_dirs.append(~s)"
(search-input-directory inputs "include/lzo")))))))))
(native-inputs (list python-pytest python-setuptools python-wheel))
(inputs (list lzo))
(home-page "https://github.com/jd-boyd/python-lzo")
(synopsis "Python bindings for the LZO data compression library")
(description
"Python-LZO provides Python bindings for LZO, i.e. you can access
the LZO library from your Python scripts thereby compressing ordinary
Python strings.")
(license license:gpl2+)))
(define-public python-lz4
(package
(name "python-lz4")
(version "4.3.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "lz4" version))
(sha256
(base32
"1nmc36j5xnk7mvwwpm0nb1sddjk5iv77h877fdkkxcngm621shz1"))
(modules '((guix build utils)))
(snippet '(begin
;; Remove bundled copy of lz4.
(delete-file-recursively "lz4libs")))))
(build-system python-build-system)
(arguments
(list #:phases
#~(modify-phases %standard-phases
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
;; Taken from tox.ini (excludes experimental tests).
(invoke "pytest" "-vv" "tests/block" "tests/frame")))))))
(native-inputs
(list pkg-config python-pytest python-pkgconfig python-setuptools-scm
;; For tests.
python-psutil))
(inputs
(list lz4))
(home-page "https://github.com/python-lz4/python-lz4")
(synopsis "LZ4 bindings for Python")
(description
"This package provides python bindings for the lz4 compression library
by Yann Collet. The project contains bindings for the LZ4 block format and
the LZ4 frame format.")
(license license:bsd-3)))
(define-public python-lzstring
(package
(name "python-lzstring")
(version "1.0.4")
(source
(origin
(method url-fetch)
(uri (pypi-uri "lzstring" version))
(sha256
(base32 "18ly9pppy2yspxzw7k1b23wk77k7m44rz2g0271bqgqrk3jn3yhs"))))
(build-system pyproject-build-system)
(native-inputs
(list python-setuptools python-wheel))
(propagated-inputs
(list python-future))
(home-page "https://github.com/gkovacs/lz-string-python")
(synopsis "String compression")
(description "Lz-string is a string compressor library for Python.")
(license license:expat)))
(define-public python-python-snappy
(package
;; PyPI contains both `snappy' and `python-snappy' as completely distinct
;; packages. To avoid a name collision in Guix, we use the variable name
;; `python-python-snappy' for the package called `python-snappy' on PyPI.
(name "python-python-snappy")
(version "0.6.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "python-snappy" version))
(sha256
(base32 "0amv12w0ybn6n1lk36x70a3l8bdjv4mn7iflb59wqsi00smhg8dn"))))
(build-system python-build-system)
(arguments
'(#:phases (modify-phases %standard-phases
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
(invoke "pytest" "-vv" "-k"
;; CFFI is only supported for PyPy builds.
(string-append "not test_snappy_cffi_enum "
"and not test_snappy_all_cffi"))))))))
(inputs (list snappy))
(native-inputs (list python-pytest))
(home-page "https://github.com/andrix/python-snappy")
(synopsis "Python bindings for the Snappy compression library")
(description
"@code{python-python-snappy} provides bindings to the Snappy library and
can be used to compress and decompress files and streams. It can also be used
directly from the command line.")
(license license:bsd-3)))
(define-public bitshuffle
(package
(name "bitshuffle")
(version "0.3.5")
(source (origin
(method url-fetch)
(uri (pypi-uri "bitshuffle" version))
(sha256
(base32
"1823x61kyax4dc2hjmc1xraskxi1193y8lvxd03vqv029jrj8cjy"))
(modules '((guix build utils)))
(snippet
'(begin
;; Remove generated Cython files.
(delete-file "bitshuffle/h5.c")
(delete-file "bitshuffle/ext.c")
#t))))
(build-system python-build-system)
(arguments
`(#:tests? #f ; fail: https://github.com/h5py/h5py/issues/769
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'fix-neon-detection
;; Neon is only for aarch64 ATM
;; see: https://github.com/kiyo-masui/bitshuffle/pull/73
(lambda _
(substitute* "src/bitshuffle_core.c"
(("#define USEARMNEON")
"#ifdef __aarch64__\n#define USEARMNEON\n#endif"))
#t))
(add-after 'unpack 'dont-build-native
(lambda _
(substitute* "setup.py"
(("'-march=native', ") ""))
#t)))))
(inputs
`(("numpy" ,python-numpy)
("h5py" ,python-h5py)
("hdf5" ,hdf5)))
(native-inputs
`(("cython" ,python-cython)))
(home-page "https://github.com/kiyo-masui/bitshuffle")
(synopsis "Filter for improving compression of typed binary data")
(description "Bitshuffle is an algorithm that rearranges typed, binary data
for improving compression, as well as a python/C package that implements this
algorithm within the Numpy framework.")
(license license:expat)))
(define-public bitshuffle-for-snappy
(package/inherit bitshuffle
(name "bitshuffle-for-snappy")
(build-system gnu-build-system)
(arguments
(substitute-keyword-arguments (package-arguments bitshuffle)
((#:tests? _ #f) #f)
((#:phases phases)
`(modify-phases %standard-phases
(replace 'configure
(lambda* (#:key outputs #:allow-other-keys)
(with-output-to-file "Makefile"
(lambda _
(format #t "\
libbitshuffle.so: src/bitshuffle.o src/bitshuffle_core.o src/iochain.o lz4/lz4.o
\tgcc -O3 -ffast-math -std=c99 -o $@ -shared -fPIC $^
%.o: %.c
\tgcc -O3 -ffast-math -std=c99 -fPIC -Isrc -Ilz4 -c $< -o $@
PREFIX:=~a
LIBDIR:=$(PREFIX)/lib
INCLUDEDIR:=$(PREFIX)/include
install: libbitshuffle.so
\tinstall -dm755 $(LIBDIR)
\tinstall -dm755 $(INCLUDEDIR)
\tinstall -m755 libbitshuffle.so $(LIBDIR)
\tinstall -m644 src/bitshuffle.h $(INCLUDEDIR)
\tinstall -m644 src/bitshuffle_core.h $(INCLUDEDIR)
\tinstall -m644 src/iochain.h $(INCLUDEDIR)
\tinstall -m644 lz4/lz4.h $(INCLUDEDIR)
" (assoc-ref outputs "out"))))
#t))))))
(inputs '())
(native-inputs '())))
(define-public python-uncompresspy
(package
(name "python-uncompresspy")
(version "0.4.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "uncompresspy" version))
(sha256
(base32 "1110dipshnijhq6dk5dxzxx3zpynm6dx5kcc430fw24b8xwlc9in"))))
(build-system pyproject-build-system)
(arguments
(list #:tests? #f)) ;no tests
(native-inputs
(list python-setuptools))
(home-page "https://github.com/kYwzor/uncompresspy")
(synopsis "Uncompressing LZW files in Python")
(description
"This package implement a pure Python module for uncompressing LZW
files (.Z), such as the ones created by Unix's shell tool compress.")
(license license:bsd-3)))
(define-public python-unix-ar
(package
(name "python-unix-ar")
(version "0.2.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "unix_ar" version))
(sha256
(base32 "0kicwxsh28x8r34a7cgzv2i65gsd4qjw2vf29pwq4fpsf3n2i4xz"))))
(build-system pyproject-build-system)
(arguments
;; These tests have timestamp-related issues.
(list #:test-flags
#~(list "-m" "unittest" "-k" "not test_add and not test_addfile")
#:phases
#~(modify-phases %standard-phases
(replace 'check
(lambda* (#:key tests? test-flags #:allow-other-keys)
(apply invoke "python" test-flags))))))
(native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/getninjas/unix_ar")
(synopsis "AR file handling in Python")
(description "This package provides utilities to handle AR files in
Python.")
(license license:bsd-3)))
(define-public python-zipp
(package
(name "python-zipp")
(version "3.23.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "zipp" version))
(sha256
(base32 "0rj182i2d7d2bz067zrk39s19j09xsxkzprl82fqql8ji9c5fwd0"))))
(build-system pyproject-build-system)
(arguments (list #:tests? #f)) ;TODO: Tests requrie extra packaging
(native-inputs
(list ;; python-big-o
;; python-coherent-licensed
;; python-jaraco-functools ; introduces cycle
;; python-jaraco-itertools
;; python-jaraco-test ; introduces cycle
python-more-itertools
python-pytest
;; python-pytest-ignore-flaky
python-setuptools
python-setuptools-scm
python-wheel))
(home-page "https://github.com/jaraco/zipp")
(synopsis
"Backport of pathlib-compatible object wrapper for zip files")
(description
"This package provides a @code{pathlib}-compatible @code{Zipfile} object
wrapper. It provides a backport of the @code{Path} object.")
(license license:expat)))
(define-public python-deflate
(package
(name "python-deflate")
(version "0.8.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "deflate" version))
(sha256
(base32 "0cgk118r3sglrjqirr22y7mr7fnhijhwd3v6isykjbf2m2dqyy41"))))
(build-system pyproject-build-system)
(arguments
(list
#:phases #~(modify-phases %standard-phases
(add-after 'unpack 'libdeflate-prefix
(lambda _
(setenv "LIBDEFLATE_PREFIX"
#$(this-package-input "libdeflate")))))))
(native-inputs (list cmake-minimal python-pytest python-scikit-build-core))
(inputs (list libdeflate))
(home-page "https://github.com/dcwatson/deflate")
(synopsis "Python wrapper for @code{libdeflate}")
(description "This package contains a very thin Python wrapper for
@code{libdeflate}.")
(license license:expat)))
(define-public python-zipstream-ng
(package
(name "python-zipstream-ng")
(version "1.7.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "zipstream-ng" version))
(sha256
(base32 "1z4zdqqs2rg3z36khgj96bpggv34av337isfv7yxg32prawj687r"))))
(build-system pyproject-build-system)
(native-inputs
(list python-pytest python-pytest-cov python-setuptools python-wheel))
(home-page "https://github.com/pR0Ps/zipstream-ng")
(synopsis "Streamable zip file generator")
(description
"This package provides a modern and easy to use streamable zip file
generator")
(license license:lgpl3)))
(define-public python-zopfli
(package
(name "python-zopfli")
(version "0.2.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "zopfli" version ".zip"))
(sha256
(base32 "1z1akqx3fjnwa75insch9p08hafikqdvqkj6mxv1k6fr81sxnj9d"))))
(build-system python-build-system)
(arguments
(list
#:phases #~(modify-phases %standard-phases
(add-after 'unpack 'use-system-zopfli
(lambda _
(setenv "USE_SYSTEM_ZOPFLI" "1")))
(add-before 'build 'set-version
(lambda _
(setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)))
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
(invoke "pytest" "-vv")))))))
(native-inputs (list unzip python-pytest python-setuptools-scm))
(inputs (list zopfli))
(home-page "https://github.com/fonttools/py-zopfli")
(synopsis "Python bindings for Zopfli")
(description "@code{pyzopfli} is a straight forward wrapper around the
@code{ZlibCompress} method of the the @code{zopfli} library.")
(license license:asl2.0)))
(define-public python-zstandard
(package
(name "python-zstandard")
(version "0.23.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "zstandard" version))
(sha256
(base32 "02dwqq5dw73zypvwpadscra8x6rwbglblh57yxl5y9g710nwdn5j"))))
(build-system pyproject-build-system)
;; TODO: Unbunle zstd.
(arguments
(list
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'patch-build-system
(lambda _
(substitute* "pyproject.toml"
((":__legacy__") ""))))
(add-before 'check 'build-extensions
(lambda _
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
(native-inputs
(list python-pytest python-setuptools))
(propagated-inputs
(list python-cffi))
(home-page "https://github.com/indygreg/python-zstandard")
(synopsis "Zstandard bindings for Python")
(description "This project provides Python bindings for interfacing with
the Zstandard compression library. A C extension and CFFI interface are
provided.")
(license license:bsd-3)))
(define-public python-pyzstd
(package
(name "python-pyzstd")
(version "0.15.9")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pyzstd" version))
(sha256
(base32 "1iycfmif15v1jhv0gsza1hyd1hn3sz0vn9s1y79abzv8axndxzfb"))
(modules '((guix build utils)))
(snippet
'(begin
;; Remove a bundled copy of the zstd sources.
(delete-file-recursively "zstd")))))
(build-system pyproject-build-system)
(arguments
(list
;; XXX: This is ugly. TODO python-team:
;; Migrate pyproject to (json) instead of (guix build json).
#:configure-flags
#~`(@ . (("--build-option" . "--dynamic-link-zstd")))))
(inputs (list `(,zstd "lib")))
(native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/Rogdham/pyzstd")
(synopsis "Zstandard bindings for Python")
(description "This package provides Python bindings to the Zstandard (zstd)
compression library. The API is similar to Python's bz2/lzma/zlib module.")
(license license:bsd-3)))
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