Add calt-exeq-alt-1
as an alternative style of !=
ligation (#608).
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parent
a0a68fa501
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10 changed files with 336 additions and 183 deletions
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@ -12,15 +12,26 @@ module.exports = function formVariantData(data, para) {
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for (const gr in data.composite) {
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const comp = data.composite[gr];
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if (!comp.tag) continue;
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const ligSets = createBuildup(data.simple, comp.buildup);
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if (comp.isOptOut) {
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optOutBuildup[comp.tag] = comp.buildup;
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optOutBuildup[comp.tag] = ligSets;
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} else {
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optInBuildup[comp.tag] = comp.buildup;
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optInBuildup[comp.tag] = ligSets;
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}
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if (!comp.isOptOut) {
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hives[gr] = { caltBuildup: [...comp.buildup] };
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hives[gr] = { caltBuildup: ligSets };
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}
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}
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return { defaultBuildup: { ...optInBuildup, ...optOutBuildup }, hives };
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};
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function createBuildup(simple, buildup) {
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let ligSet = new Set();
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for (const s of buildup) {
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if (!simple[s]) throw new Error("Cannot find simple ligation group " + s);
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ligSet.add(simple[s].ligGroup);
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}
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return Array.from(ligSet);
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}
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