146 lines
2.3 KiB
JavaScript
146 lines
2.3 KiB
JavaScript
import fs from "fs";
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import path from "path";
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import url from "url";
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import * as toml from "@iarna/toml";
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const ligationSamplesNarrow = [
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[
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"-<<",
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"-<",
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"-<-",
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"<--",
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"<---",
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"<<-",
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"<-",
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"->",
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"->>",
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"-->",
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"--->",
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"->-",
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">-",
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">>-"
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],
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[
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"=<<",
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"=<",
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"=<=",
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"<==",
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"<===",
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"<<=",
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"<=",
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"=>",
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"=>>",
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"==>",
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"===>",
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"=>=",
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">=",
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">>="
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],
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["<->", "<-->", "<--->", "<---->", "<=>", "<==>", "<===>", "<====>", "::", ":::", "__"],
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[
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"<~~",
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"</",
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"</>",
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"/>",
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"~~>",
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"==",
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"!=",
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"/=",
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`~=`,
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`<>`,
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"===",
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"!==",
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"!===",
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"=/=",
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"=!="
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],
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[
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"<:",
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":=",
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":-",
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":+",
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"<*",
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"<*>",
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"*>",
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"<|",
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"<|>",
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"|>",
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"<.",
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"<.>",
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".>",
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"+:",
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"-:",
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"=:",
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":>"
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],
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[
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"(*",
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"*)",
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"[|",
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"|]",
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"{|",
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"|}",
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"++",
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"+++",
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"\\/",
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"/\\",
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"|-",
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"-|",
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"<!--",
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"<!---",
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"<***>"
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]
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];
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function buildLigationSet(ligData, getKey) {
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const ligationSets = new Map([
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["*off", { tag: "calt", rank: 0, desc: "Ligation Off", brief: "Off", ligSets: [] }]
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]);
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for (const sel in ligData.composite) {
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const comp = ligData.composite[sel];
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if (!comp.tag) continue;
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const key = getKey(comp);
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let item = ligationSets.get(key);
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if (!item) {
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let ligSets = new Set();
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for (const s of comp.buildup) {
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ligSets.add(ligData.simple[s].ligGroup);
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}
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item = {
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selector: sel,
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tag: comp.tag,
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rank: 1,
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ligSets: [...ligSets],
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tagName: [comp.tag],
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desc: comp.desc,
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brief: comp.brief || comp.desc
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};
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ligationSets.set(key, item);
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} else {
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item.tagName = [...item.tagName, comp.tag];
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item.desc += ", " + comp.desc;
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item.brief += ", " + comp.brief;
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}
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}
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return ligationSets;
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}
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export async function parseLigationData() {
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const __dirname = url.fileURLToPath(new URL(".", import.meta.url));
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const ligToml = await fs.promises.readFile(
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path.join(__dirname, "../../params/ligation-set.toml"),
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"utf8"
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);
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const ligData = toml.parse(ligToml);
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const ligationSets = buildLigationSet(ligData, comp => comp.buildup.join(","));
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const nonMergeLigationSets = buildLigationSet(
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ligData,
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comp => comp.tag + comp.buildup.join(",")
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);
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return {
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samplesNarrow: ligationSamplesNarrow,
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cherry: ligData.simple,
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rawSets: ligData.composite,
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sets: [...ligationSets.values()],
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nonMergeSets: [...nonMergeLigationSets.values()]
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};
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}
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