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gnu: r-basics: Fix tests.
* gnu/packages/bioconductor.scm (r-basics)[arguments]: Disable ERCC tests. [properties]; Record updater-extra-native-inputs. [native-inputs]: Add r-scrnaseq. Change-Id: Ic60eb7ca4ca17c1328d779352c1692a394814b9e
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1 changed files with 13 additions and 2 deletions
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@ -26656,8 +26656,19 @@ approach and a multi-scale contact profile.")
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(uri (bioconductor-uri "BASiCS" version))
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(sha256
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(base32 "1pdbkxamzcpgiqycp3dzmakj3laclgj3r9q9garz3q86m59fkrzb"))))
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(properties `((upstream-name . "BASiCS")))
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(properties
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'((upstream-name . "BASiCS")
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(updater-extra-native-inputs . ("r-scrnaseq"))))
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(build-system r-build-system)
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(arguments
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(list
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#:phases
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'(modify-phases %standard-phases
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(add-after 'unpack 'disable-bad-tests
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(lambda _
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(substitute* "tests/testthat/test_misc.R"
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((".*ERCC works.*" m)
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(string-append m "skip('guix')\n"))))))))
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(propagated-inputs
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(list r-assertthat
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r-biobase
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@ -26681,7 +26692,7 @@ approach and a multi-scale contact profile.")
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r-singlecellexperiment
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r-summarizedexperiment
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r-viridis))
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(native-inputs (list r-knitr r-testthat))
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(native-inputs (list r-knitr r-scrnaseq r-testthat))
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(home-page "https://github.com/catavallejos/BASiCS")
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(synopsis "Bayesian analysis of single-cell sequencing data")
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(description
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