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gnu: r-acme: Fix build with gcc-14.
* gnu/packages/bioconductor.scm (r-acme)[arguments]: New field to relax gcc-14's strictness. Change-Id: Ib71324b6ac3d475bcdd9cd4bc868acb680122eba
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@ -14,6 +14,7 @@
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;;; Copyright © 2021 Nicolas Vallet <nls.vallet@gmail.com>
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;;; Copyright © 2021 Nicolas Vallet <nls.vallet@gmail.com>
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;;; Copyright © 2023 Navid Afkhami <Navid.Afkhami@mdc-berlin.de>
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;;; Copyright © 2023 Navid Afkhami <Navid.Afkhami@mdc-berlin.de>
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;;; Copyright © 2024 Spencer King <spencer.king@geneoscopy.com>
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;;; Copyright © 2024 Spencer King <spencer.king@geneoscopy.com>
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;;; Copyright © 2024, 2025 Janneke Nieuwenhuizen <janneke@gnu.org>
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;;;
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;;;
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;;; This file is part of GNU Guix.
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;;; This file is part of GNU Guix.
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;;;
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;;;
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@ -23245,6 +23246,23 @@ printing and plotting @code{aCGH} objects.")
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"1s1s00b6mrv710x14vnscs99iinqq5pml684vpgbshlvszzyw71h"))))
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"1s1s00b6mrv710x14vnscs99iinqq5pml684vpgbshlvszzyw71h"))))
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(properties `((upstream-name . "ACME")))
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(properties `((upstream-name . "ACME")))
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(build-system r-build-system)
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(build-system r-build-system)
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(arguments
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(list
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#:phases
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#~(modify-phases %standard-phases
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(add-before 'install 'relax-gcc-14-strictness
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(lambda _
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;; XXX FIXME: $HOME/.R/Makevars seems to be the only way to
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;; set custom CFLAGS for R?
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(setenv "HOME" (getcwd))
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(mkdir-p ".R")
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(with-directory-excursion ".R"
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(with-output-to-file "Makevars"
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(lambda _
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(display
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(string-append
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"CFLAGS=-g -O2"
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" -Wno-error=incompatible-pointer-types\n"))))))))))
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(propagated-inputs (list r-biobase r-biocgenerics))
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(propagated-inputs (list r-biobase r-biocgenerics))
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(home-page "https://bioconductor.org/packages/aCGH/")
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(home-page "https://bioconductor.org/packages/aCGH/")
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(synopsis "Calculating microarray enrichment")
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(synopsis "Calculating microarray enrichment")
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