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gnu: r-omnipathr/devel: Update to 3.15.3.
* gnu/packages/bioinformatics.scm (r-omnipathr/devel): Update to 3.15.3. [propagated-inputs]: Add r-fs, r-httr2, r-lubridate, r-r-utils, r-rmarkdown, r-rsqlite, r-sessioninfo, r-stringi, r-vctrs, r-xml, and r-zip; remove r-httr. Change-Id: I062eda0ab64edf696d89c4527e353a72dd6c2aa0
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1 changed files with 61 additions and 53 deletions
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@ -18755,20 +18755,18 @@ Mixtures.")
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;; Needed for r-liana
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;; Needed for r-liana
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(define-public r-omnipathr/devel
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(define-public r-omnipathr/devel
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(let ((commit "679bb79e319af246a16968d27d64d8d6937a331a")
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(revision "1"))
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(package
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(package
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(name "r-omnipathr")
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(name "r-omnipathr")
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(version (git-version "3.5.5" revision commit))
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(version "3.15.3")
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(source (origin
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(source (origin
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(method git-fetch)
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(method git-fetch)
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(uri (git-reference
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(uri (git-reference
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(url "https://github.com/saezlab/omnipathr")
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(url "https://github.com/saezlab/omnipathr")
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(commit commit)))
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(file-name (git-file-name name version))
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(sha256
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(sha256
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(base32
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(base32
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"10h6lyapyx4ik8r4kx5z2dly46jlf2v57caq4g6i0hzifyz2vgjq"))))
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"0sq32s3v7q5w9zym54fm0ws1d1wnwyhczazyk9g722ydx2zvbls4"))))
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(properties `((upstream-name . "OmnipathR")))
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(properties `((upstream-name . "OmnipathR")))
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(build-system r-build-system)
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(build-system r-build-system)
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(arguments
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(arguments
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@ -18782,26 +18780,36 @@ Mixtures.")
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r-curl
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r-curl
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r-digest
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r-digest
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r-dplyr
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r-dplyr
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r-httr
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r-fs
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r-httr2
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r-igraph
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r-igraph
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r-jsonlite
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r-jsonlite
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r-later
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r-later
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r-logger
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r-logger
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r-lubridate
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r-magrittr
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r-magrittr
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r-progress
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r-progress
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r-purrr
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r-purrr
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r-r-utils
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r-rappdirs
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r-rappdirs
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r-readr
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r-readr
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r-readxl
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r-readxl
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r-rlang
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r-rlang
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r-rmarkdown
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r-rsqlite
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r-rvest
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r-rvest
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r-sessioninfo
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r-stringi
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r-stringr
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r-stringr
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r-tibble
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r-tibble
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r-tidyr
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r-tidyr
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r-tidyselect
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r-tidyselect
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r-vctrs
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r-withr
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r-withr
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r-xml
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r-xml2
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r-xml2
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r-yaml))
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r-yaml
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r-zip))
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(native-inputs (list r-knitr r-testthat))
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(native-inputs (list r-knitr r-testthat))
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(home-page "https://github.com/saezlab/omnipathr")
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(home-page "https://github.com/saezlab/omnipathr")
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(synopsis "OmniPath web service client and more")
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(synopsis "OmniPath web service client and more")
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@ -18816,7 +18824,7 @@ RegNetwork, ReMap, TF census, TRRUST and Vinayagam et al. 2011. Furthermore,
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OmnipathR features a close integration with the NicheNet method for ligand
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OmnipathR features a close integration with the NicheNet method for ligand
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activity prediction from transcriptomics data, and its R implementation
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activity prediction from transcriptomics data, and its R implementation
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@code{nichenetr}.")
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@code{nichenetr}.")
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(license license:expat))))
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(license license:expat)))
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(define-public r-liana
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(define-public r-liana
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(let ((commit "10d81773e0874de676eb106ce56e3cf9d4fe01d3")
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(let ((commit "10d81773e0874de676eb106ce56e3cf9d4fe01d3")
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