gnu: r-omnipathr/devel: Update to 3.15.3.

* gnu/packages/bioinformatics.scm (r-omnipathr/devel): Update to 3.15.3.
[propagated-inputs]: Add r-fs, r-httr2, r-lubridate, r-r-utils, r-rmarkdown,
r-rsqlite, r-sessioninfo, r-stringi, r-vctrs, r-xml, and r-zip; remove r-httr.

Change-Id: I062eda0ab64edf696d89c4527e353a72dd6c2aa0
This commit is contained in:
Ricardo Wurmus 2025-02-28 11:32:36 +01:00
parent 8814cd92f8
commit f438c38dce
No known key found for this signature in database
GPG key ID: 197A5888235FACAC

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@ -18755,20 +18755,18 @@ Mixtures.")
;; Needed for r-liana ;; Needed for r-liana
(define-public r-omnipathr/devel (define-public r-omnipathr/devel
(let ((commit "679bb79e319af246a16968d27d64d8d6937a331a")
(revision "1"))
(package (package
(name "r-omnipathr") (name "r-omnipathr")
(version (git-version "3.5.5" revision commit)) (version "3.15.3")
(source (origin (source (origin
(method git-fetch) (method git-fetch)
(uri (git-reference (uri (git-reference
(url "https://github.com/saezlab/omnipathr") (url "https://github.com/saezlab/omnipathr")
(commit commit))) (commit (string-append "v" version))))
(file-name (git-file-name name version)) (file-name (git-file-name name version))
(sha256 (sha256
(base32 (base32
"10h6lyapyx4ik8r4kx5z2dly46jlf2v57caq4g6i0hzifyz2vgjq")))) "0sq32s3v7q5w9zym54fm0ws1d1wnwyhczazyk9g722ydx2zvbls4"))))
(properties `((upstream-name . "OmnipathR"))) (properties `((upstream-name . "OmnipathR")))
(build-system r-build-system) (build-system r-build-system)
(arguments (arguments
@ -18782,26 +18780,36 @@ Mixtures.")
r-curl r-curl
r-digest r-digest
r-dplyr r-dplyr
r-httr r-fs
r-httr2
r-igraph r-igraph
r-jsonlite r-jsonlite
r-later r-later
r-logger r-logger
r-lubridate
r-magrittr r-magrittr
r-progress r-progress
r-purrr r-purrr
r-r-utils
r-rappdirs r-rappdirs
r-readr r-readr
r-readxl r-readxl
r-rlang r-rlang
r-rmarkdown
r-rsqlite
r-rvest r-rvest
r-sessioninfo
r-stringi
r-stringr r-stringr
r-tibble r-tibble
r-tidyr r-tidyr
r-tidyselect r-tidyselect
r-vctrs
r-withr r-withr
r-xml
r-xml2 r-xml2
r-yaml)) r-yaml
r-zip))
(native-inputs (list r-knitr r-testthat)) (native-inputs (list r-knitr r-testthat))
(home-page "https://github.com/saezlab/omnipathr") (home-page "https://github.com/saezlab/omnipathr")
(synopsis "OmniPath web service client and more") (synopsis "OmniPath web service client and more")
@ -18816,7 +18824,7 @@ RegNetwork, ReMap, TF census, TRRUST and Vinayagam et al. 2011. Furthermore,
OmnipathR features a close integration with the NicheNet method for ligand OmnipathR features a close integration with the NicheNet method for ligand
activity prediction from transcriptomics data, and its R implementation activity prediction from transcriptomics data, and its R implementation
@code{nichenetr}.") @code{nichenetr}.")
(license license:expat)))) (license license:expat)))
(define-public r-liana (define-public r-liana
(let ((commit "10d81773e0874de676eb106ce56e3cf9d4fe01d3") (let ((commit "10d81773e0874de676eb106ce56e3cf9d4fe01d3")