Commit graph

7958 commits

Author SHA1 Message Date
Ricardo Wurmus
d6f10eb7f6
gnu: r-champ: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-champ): Update to 2.38.0.

Change-Id: I7601146f2446f0ecd192107f1e9d3e23d56fb26c
2025-05-12 08:54:27 +02:00
Ricardo Wurmus
6fc44ddda8
gnu: r-category: Update to 2.74.0.
* gnu/packages/bioconductor.scm (r-category): Update to 2.74.0.

Change-Id: Ib2b486613b733773cd938382b8884c6c656743b9
2025-05-12 08:54:27 +02:00
Ricardo Wurmus
5990c56a74
gnu: r-biostrings: Update to 2.76.0.
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.76.0.

Change-Id: I79e1b7be7bc0b21c0e662127eb29a8bde89dfe2c
2025-05-12 08:54:27 +02:00
Ricardo Wurmus
c0134b79a8
gnu: r-biomart: Update to 2.64.0.
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.64.0.

Change-Id: I7c02a16eb87c4ca33551155df0a2c687275263d6
2025-05-12 08:54:27 +02:00
Ricardo Wurmus
1f57a1db08
gnu: r-bamsignals: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.40.0.

Change-Id: Id959b3e8f278296d69ac49a6e66c1777ef232165
2025-05-12 08:54:27 +02:00
Ricardo Wurmus
bbda45d404
gnu: r-annotationfilter: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.32.0.

Change-Id: If8928c4d1d02594994a08495b3b43994a60926f8
2025-05-12 08:54:27 +02:00
Ricardo Wurmus
0e774ade25
gnu: r-affxparser: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.80.0.

Change-Id: I89c59d3780b20c4584f8141bdbf88722eb960bca
2025-05-12 08:54:27 +02:00
Ricardo Wurmus
991a844a18
gnu: r-affycoretools: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.80.0.

Change-Id: I23450c5daa29ba395708fba62af8e4bfd5c51969
2025-05-12 08:54:27 +02:00
Ricardo Wurmus
2aedd59c4e
gnu: r-affycontam: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.66.0.

Change-Id: I65de3dee28cd1f0bd0040e25f39a0bcb8dea39e7
2025-05-12 08:54:26 +02:00
Ricardo Wurmus
dbc3e1e423
gnu: r-affycomp: Update to 1.84.0.
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.84.0.

Change-Id: I03fdb9bc8898df4a752a0e7d6925b3387578a2bc
2025-05-12 08:54:26 +02:00
Ricardo Wurmus
f3a8a6ff1a
gnu: r-nebulosa: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-nebulosa): Update to 1.18.0.

Change-Id: I561c418b3d4f0f56ddfce63a707bfc3ad2005359
2025-05-12 08:54:26 +02:00
Ricardo Wurmus
4e9417729a
gnu: r-italics: Update to 2.68.0.
* gnu/packages/bioconductor.scm (r-italics): Update to 2.68.0.

Change-Id: Ibc0230684e4b46b953960f16fce0fc9dd460af38
2025-05-12 08:54:26 +02:00
Ricardo Wurmus
06c208e2a6
gnu: r-isoformswitchanalyzer: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 2.8.0.

Change-Id: I15b0b2a2724fb00e79afec0456e46451ffb9bbf6
2025-05-12 08:54:26 +02:00
Ricardo Wurmus
a236b7bd4b
gnu: r-iranges: Update to 2.42.0.
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.42.0.

Change-Id: Ibe5d8338987d50e2a72e7e0fef03832a71a22ccc
2025-05-12 08:54:26 +02:00
Ricardo Wurmus
f6f264ef35
gnu: r-infercnv: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.24.0.

Change-Id: I15a665cd93123b5e3c7d9f2c0d8c18fa1e96047b
2025-05-12 08:54:26 +02:00
Ricardo Wurmus
30a2c7e2d3
gnu: r-ideoviz: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.44.0.

Change-Id: I4771b11f85b88bf094531293637ed284ecc7ca53
2025-05-12 08:54:26 +02:00
Ricardo Wurmus
ae47631a5a
gnu: r-dyndoc: Update to 1.86.0.
* gnu/packages/bioconductor.scm (r-dyndoc): Update to 1.86.0.

Change-Id: Ia85730074f3e2376e64d8647b6c0c6be3caaa646
2025-05-12 08:54:26 +02:00
Ricardo Wurmus
c1e3558c45
gnu: r-dss: Update to 2.56.0.
* gnu/packages/bioconductor.scm (r-dss): Update to 2.56.0.

Change-Id: I815058f2da045ce1f2247145bafc23a83fefbd81
2025-05-12 08:54:25 +02:00
Ricardo Wurmus
4a8e2bcae2
gnu: r-dropletutils: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-dropletutils): Update to 1.28.0.

Change-Id: Ibe37b562058659ae3a93d723062df3af1dac003e
2025-05-12 08:54:25 +02:00
Ricardo Wurmus
3edec3fd3b
gnu: r-dmrcate: Update to 3.3.1.
* gnu/packages/bioconductor.scm (r-dmrcate): Update to 3.3.1.

Change-Id: I837e99a4515b58dcb8990a54439f742c8ea3af18
2025-05-12 08:54:25 +02:00
Ricardo Wurmus
18b285c9fc
gnu: r-derfinderhelper: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-derfinderhelper): Update to 1.42.0.

Change-Id: Ica6c804b93d00a4f067748ae398772421ed8d571
2025-05-12 08:54:25 +02:00
Ricardo Wurmus
4a1c548b79
gnu: r-derfinder: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-derfinder): Update to 1.42.0.

Change-Id: Ief25d910c8333b084f2076b6149f26b927352d96
2025-05-12 08:54:25 +02:00
Ricardo Wurmus
d8c0b63dbe
gnu: r-densvis: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-densvis): Update to 1.18.0.

Change-Id: I3f6a99d9214e7a43ee67d4309a50bca403a0e737
2025-05-12 08:54:25 +02:00
Ricardo Wurmus
a2ac5d2807
gnu: r-delayedarray: Update to 0.34.1.
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.34.1.

Change-Id: Icba6fffa06a021f84f4da61f5f84bc17ce95f025
2025-05-12 08:54:25 +02:00
Ricardo Wurmus
e4d542bcdc
gnu: r-degreport: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-degreport): Update to 1.44.0.

Change-Id: Ia19b01aaca93854263230b3d36d5e22c99de38b8
2025-05-12 08:54:25 +02:00
Ricardo Wurmus
1d39fbf69f
gnu: r-deepsnv: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.54.0.
[native-inputs]: Add r-rcolorbrewer and r-txdb-hsapiens-ucsc-hg19-knowngene.

Change-Id: Ibbde7af2155e5cde4da7c324a7b27913df1a01e6
2025-05-12 08:54:25 +02:00
Ricardo Wurmus
35a50ac501
gnu: r-decoupler: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-decoupler): Update to 2.14.0.

Change-Id: I67554d2a5f7daee52708a861a0a4b6773713d3d1
2025-05-12 08:54:24 +02:00
Ricardo Wurmus
d8b5fb9532
gnu: r-deconvr: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.14.0.

Change-Id: I7c507a100faf1c2c2b5b3d7fc1297d4480fd201c
2025-05-12 08:54:24 +02:00
Ricardo Wurmus
f1e841b872
gnu: r-decontam: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-decontam): Update to 1.28.0.

Change-Id: If6d9ed9e3c40626f80faba063ef2994c0ea4c100
2025-05-12 08:54:24 +02:00
Ricardo Wurmus
8c982032ba
gnu: r-deconrnaseq: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-deconrnaseq): Update to 1.50.0.

Change-Id: I25d09b0a8214be25a16f93c2e1562e4d50bea298
2025-05-12 08:54:24 +02:00
Ricardo Wurmus
ab53878c6d
gnu: r-decomptumor2sig: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-decomptumor2sig): Update to 2.24.0.

Change-Id: I75e58061b9df3467b545da894d30fdda20665d7a
2025-05-12 08:54:24 +02:00
Ricardo Wurmus
fdcbb44ef2
gnu: r-decipher: Update to 3.4.0.
* gnu/packages/bioconductor.scm (r-decipher): Update to 3.4.0.

Change-Id: I8ee729e8d9cb5f3fe3c3e253b40f966751a66aa9
2025-05-12 08:54:24 +02:00
Ricardo Wurmus
d9f6191872
gnu: r-debcam: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-debcam): Update to 1.26.0.

Change-Id: Ie2c5c756a2808e160828a5fdaee2e6698dbbbb70
2025-05-12 08:54:24 +02:00
Ricardo Wurmus
5396e931db
gnu: r-dearseq: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.20.0.

Change-Id: I642796ab34c3636db8615ece31e09124337569a3
2025-05-12 08:54:24 +02:00
Ricardo Wurmus
a1a675cfdc
gnu: r-damefinder: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-damefinder): Update to 1.20.0.

Change-Id: Idbda0f7fd7c795dbc9cdb66466b9708b6ca75ee6
2025-05-12 08:54:24 +02:00
Ricardo Wurmus
6b9107adc0
gnu: r-dama: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-dama): Update to 1.80.0.

Change-Id: I5c0859cb508f8b3d0db329301f389f462af1f86c
2025-05-12 08:54:23 +02:00
Ricardo Wurmus
eebc7ea0ac
gnu: r-cummerbund: Update to 2.50.0.
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.50.0.

Change-Id: I7200533dc84c1a128ce7351172fb41238698a6ee
2025-05-12 08:54:23 +02:00
Ricardo Wurmus
713040e66f
gnu: r-csaw: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-csaw): Update to 1.42.0.
[propagated-inputs]: Remove r-zlibbioc.

Change-Id: Ia429e2ddfbb0e246833636842aeff1e3c2eb1998
2025-05-12 08:54:23 +02:00
Ricardo Wurmus
a9e3ca0488
gnu: r-coverageview: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.46.0.

Change-Id: Ib5a8b52e15ec3d85c9582137cb3b4191a77f2876
2025-05-12 08:54:23 +02:00
Ricardo Wurmus
0fd8430fe1
gnu: r-coregx: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-coregx): Update to 2.12.0.

Change-Id: I69349b6a20424a9d2beaff1f7bf9f2c9e023ef76
2025-05-12 08:54:23 +02:00
Ricardo Wurmus
f4b7068259
gnu: r-chihaya: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-chihaya): Update to 1.8.0.

Change-Id: I87b10504be5edec00579c02821a3367da9961fb5
2025-05-12 08:54:23 +02:00
Ricardo Wurmus
c82badf5bd
gnu: r-cellid: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-cellid): Update to 1.16.0.

Change-Id: I1b6aaae139be30d5714125aee3ff212452886cc7
2025-05-12 08:54:23 +02:00
Ricardo Wurmus
af9ce08e55
gnu: r-ccfindr: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-ccfindr): Update to 1.28.0.

Change-Id: I63c9ce2143e94cafbbf63e656c5b44791881247e
2025-05-12 08:54:23 +02:00
Ricardo Wurmus
b3003a3f1e
gnu: r-cardelino: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-cardelino): Update to 1.10.0.
[native-inputs]: Add r-covr.

Change-Id: I29cdf246d3eb2a85a8ddd62f7d260380ade28f17
2025-05-12 08:54:23 +02:00
Ricardo Wurmus
672db326ab
gnu: r-breakpointr: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-breakpointr): Update to 1.26.0.

Change-Id: I1bd9ec159323e6f4f8c46473969b3710d241afb6
2025-05-12 08:54:23 +02:00
Ricardo Wurmus
db5f6c1cee
gnu: r-biocversion: Update to 3.21.1.
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.21.1.

Change-Id: If09a18cc74568418a1709168ed5880aab961503a
2025-05-12 08:54:22 +02:00
Ricardo Wurmus
b98410aa52
gnu: r-barcodetrackr: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-barcodetrackr): Update to 1.16.0.

Change-Id: I9f6bf2a26894e8f1ac09abcd94f08a9151ab2d20
2025-05-12 08:54:22 +02:00
Ricardo Wurmus
8b3e1d00a8
gnu: r-banocc: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-banocc): Update to 1.32.0.

Change-Id: Ifbc52a3251ce543476d480e3f2693c520dccaaea
2025-05-12 08:54:22 +02:00
Ricardo Wurmus
d11e78f9dc
gnu: r-bandits: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.24.0.

Change-Id: Id1b9bcf37631edc5b20246c6bbdbdc991de8c365
2025-05-12 08:54:22 +02:00
Ricardo Wurmus
cb6e002032
gnu: r-bambu: Update to 3.10.0.
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.10.0.

Change-Id: I841d62e513d3462df1343e05211b7bf1366b400f
2025-05-12 08:54:22 +02:00