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7767 commits

Author SHA1 Message Date
Ricardo Wurmus
cc5a0b9a39
gnu: r-siggenes: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.82.0.

Change-Id: I1db58f6565d96feda1607d28b3a47243c8398349
2025-05-12 08:54:45 +02:00
Ricardo Wurmus
fb8866457b
gnu: r-geoquery: Update to 2.76.0.
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.76.0.

Change-Id: I528d5a8b59e1ebe075e98a6061bbef2dd02585cc
2025-05-12 08:54:45 +02:00
Ricardo Wurmus
a187086cb0
gnu: r-scone: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-scone): Update to 1.32.0.
[propagated-inputs]: Add r-sparsearray.
[native-inputs]: Add r-delayedarray.

Change-Id: I8809f0c15743cd2c41ffdabf8f660860ea507dd9
2025-05-12 08:54:45 +02:00
Ricardo Wurmus
77436fb0db
gnu: r-scdd: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.32.0.
[native-inputs]: Add r-gridextra.

Change-Id: Ib64f69f9f217d299965cde6a188fdd4abc7839fd
2025-05-12 08:54:45 +02:00
Ricardo Wurmus
8da1b771c5
gnu: r-noiseq: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.52.0.

Change-Id: I52e83bb95a2bf98c5c2f1d8da7e851c5de1c865b
2025-05-12 08:54:45 +02:00
Ricardo Wurmus
2dba34f9ab
gnu: r-sangerseqr: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-sangerseqr): Update to 1.44.0.
[native-inputs]: Add r-biocgenerics.

Change-Id: I801f477310edd3ce3a439fcafcb88d5662b8bb00
2025-05-12 08:54:45 +02:00
Ricardo Wurmus
1dfab386e0
gnu: r-monocle: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.36.0.

Change-Id: I7712b16c1176b7790c32d27b914e6c3537cbc6eb
2025-05-12 08:54:44 +02:00
Ricardo Wurmus
375379c1d5
gnu: r-batchelor: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.24.0.

Change-Id: I4900dbb3e58e11d37d6929d56a75c64a69e8e703
2025-05-12 08:54:44 +02:00
Ricardo Wurmus
0f5d2b6db9
gnu: r-residualmatrix: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.18.0.

Change-Id: I82f6fafef18a50aa1a20f1369976d40f1bafee5c
2025-05-12 08:54:44 +02:00
Ricardo Wurmus
43748f0a96
gnu: r-icobra: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.36.0.

Change-Id: I47aae6e42fd1d4ba0e4ea3972d5f1666b2b90b68
2025-05-12 08:54:44 +02:00
Ricardo Wurmus
89445ca312
gnu: r-ihw: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.36.0.
[native-inputs]: Remove r-ggplot2 and r-scales.

Change-Id: I84dac6ccfe1ccc1350bc42cca7b9195cf2754fc8
2025-05-12 08:54:44 +02:00
Ricardo Wurmus
e1587fd410
gnu: r-hmmcopy: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-hmmcopy): Update to 1.50.0.

Change-Id: I2d9a3d26f64979ce32a51508e4ef9d9d50448cd5
2025-05-12 08:54:44 +02:00
Ricardo Wurmus
a0f13e6d41
gnu: r-dnacopy: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.82.0.

Change-Id: Icb874b15d30811b389cd37388eb7f1fdaec2df77
2025-05-12 08:54:44 +02:00
Ricardo Wurmus
4ebab9d00d
gnu: r-chipexoqual: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.32.0.

Change-Id: I61dec95f81b51ccf1e68426bad957d15ef3488bc
2025-05-12 08:54:44 +02:00
Ricardo Wurmus
69aee70e92
gnu: r-destiny: Update to 3.22.0.
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.22.0.

Change-Id: I4396b700afcf0af79323c1e185235d06aa015e7d
2025-05-12 08:54:44 +02:00
Ricardo Wurmus
cde147c8e7
gnu: r-biocsingular: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.24.0.

Change-Id: I6372e020d35cc952789c3a3c1e0b35c8852a9b10
2025-05-12 08:54:43 +02:00
Ricardo Wurmus
fe1cbf3e15
gnu: r-metapod: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.16.0.

Change-Id: I60163e5e465b9e3e87bdf00aea4caf1064a73b7c
2025-05-12 08:54:43 +02:00
Ricardo Wurmus
d20d03ac91
gnu: r-ggtree: Update to 3.16.0.
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.16.0.

Change-Id: I1ceff65f638f648209b30b2b352e7e6e37d113ee
2025-05-12 08:54:43 +02:00
Ricardo Wurmus
b60419d7c5
gnu: r-treesummarizedexperiment: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-treesummarizedexperiment): Update to 2.16.0.

Change-Id: I532ca02cd0601498664208d6e1a621d9188e7427
2025-05-12 08:54:43 +02:00
Ricardo Wurmus
23a1def043
gnu: r-scaledmatrix: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.16.0.
[native-inputs]: Add r-s4arrays.

Change-Id: I021ea652e6a09d1f92494cdd57784e73882e9443
2025-05-12 08:54:43 +02:00
Ricardo Wurmus
8102a95476
gnu: r-biocneighbors: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 2.2.0.

Change-Id: I569a7cf16afaa1d2cff4eaaf9f20b18b6675d712
2025-05-12 08:54:43 +02:00
Ricardo Wurmus
cb5923eac3
gnu: r-ruvseq: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.42.0.

Change-Id: I59593913099239828f7dd947f96c89ccb22f9f9d
2025-05-12 08:54:43 +02:00
Ricardo Wurmus
42cee3bb5d
gnu: r-dnabarcodes: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.38.0.

Change-Id: I6791f6ea116ef8ac509a3bf405da52d3fd8001fc
2025-05-12 08:54:43 +02:00
Ricardo Wurmus
dfb5ffd341
gnu: r-inspect: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.38.0.

Change-Id: I711cb550c81bdb7f366f30b44f06c744097a602e
2025-05-12 08:54:43 +02:00
Ricardo Wurmus
761b81f3cb
gnu: r-plyranges: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-plyranges): Update to 1.28.0.
[native-inputs]: Add r-bsgenome-hsapiens-ucsc-hg19.

Change-Id: I8d7870ef9cd8f72f7172373fec330595269e4669
2025-05-12 08:54:42 +02:00
Ricardo Wurmus
b6c33ffca9
gnu: r-plgem: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.80.0.

Change-Id: I3ebfffef02b597fa7dd6f1acfd8ef8a5404c178f
2025-05-12 08:54:42 +02:00
Ricardo Wurmus
66577ab526
gnu: r-rots: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-rots): Update to 2.0.0.
[propagated-inputs]: Add r-biocparallel and r-lme4.

Change-Id: If3cc700c891dc0f7779e719cf9756c6475c0b8e3
2025-05-12 08:54:42 +02:00
Ricardo Wurmus
1f75edede3
gnu: r-glimma: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.18.0.

Change-Id: Ie2f304110937baa3f167be99d04cda3b1398b25e
2025-05-12 08:54:42 +02:00
Ricardo Wurmus
fa6ccb13f2
gnu: r-goseq: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.60.0.

Change-Id: I94370c3d2812d61021fbf4646842d39070267e6b
2025-05-12 08:54:42 +02:00
Ricardo Wurmus
e657e76bac
gnu: r-ctc: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.82.0.

Change-Id: If8397a89d983b847348c4c426589cdc810150d33
2025-05-12 08:54:42 +02:00
Ricardo Wurmus
f1a961aa00
gnu: r-genomicinteractions: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.42.0.

Change-Id: If743bd7f55507a0cf54701e735c17bc102360b15
2025-05-12 08:54:42 +02:00
Ricardo Wurmus
08ba40a96f
gnu: r-interactionset: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.36.0.

Change-Id: Iea2c44b8b10aab6d5d3fbbbd20b4d05fc6fea71c
2025-05-12 08:54:42 +02:00
Ricardo Wurmus
cb70c091e4
gnu: r-bayseq: Update to 2.42.0.
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.42.0.

Change-Id: Ia83b350201d30e4ee4fde8ba207d8127faad1322
2025-05-12 08:54:42 +02:00
Ricardo Wurmus
79adcf5d9b
gnu: r-cghcall: Update to 2.70.0.
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.70.0.

Change-Id: I7a5f075fba10875dada8e926d3f333ba84a49ffb
2025-05-12 08:54:41 +02:00
Ricardo Wurmus
c629a770c6
gnu: r-cghbase: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.68.0.

Change-Id: I1e13be41c324391e23293c6113dbec937e9eb74f
2025-05-12 08:54:41 +02:00
Ricardo Wurmus
80e2cd4341
gnu: r-marray: Update to 1.86.0.
* gnu/packages/bioconductor.scm (r-marray): Update to 1.86.0.

Change-Id: I49eaed0e9ffcdf74e051eb96d62fb315f5d22b98
2025-05-12 08:54:41 +02:00
Ricardo Wurmus
b8580339aa
gnu: r-matrixgenerics: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.20.0.

Change-Id: I4a3480a6b10267b70a6e0c55df19e568194e194f
2025-05-12 08:54:41 +02:00
Ricardo Wurmus
fb17561609
gnu: r-chippeakanno: Update to 3.42.0.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.42.0.
[native-inputs]: Remove r-biomart.

Change-Id: Ifb8f36d7a218e8704bdb8fce91efc8c16dbb8051
2025-05-12 08:54:41 +02:00
Ricardo Wurmus
3d48ddad5a
gnu: r-pepsnmr: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-pepsnmr): Update to 1.26.0.

Change-Id: Ia4a90afbe99a1809adf0100b3d6eadf16efd28da
2025-05-12 08:54:41 +02:00
Ricardo Wurmus
e23b45f84c
gnu: r-ggtreeextra: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-ggtreeextra): Update to 1.18.0.

Change-Id: I1c76f57f79d48cbf8f87ea11ba6defe380abd553
2025-05-12 08:54:41 +02:00
Ricardo Wurmus
ae192ce1f4
gnu: r-graph: Update to 1.86.0.
* gnu/packages/bioconductor.scm (r-graph): Update to 1.86.0.

Change-Id: I8e0400ae03df88c752ff222912c574cbdaffcd7b
2025-05-12 08:54:41 +02:00
Ricardo Wurmus
e2efa7ebc3
gnu: r-multtest: Update to 2.64.0.
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.64.0.

Change-Id: I94ca89e8a31ce13e19908d1ee4c70af7b908baea
2025-05-12 08:54:41 +02:00
Ricardo Wurmus
4a13e7adb0
gnu: r-multibac: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-multibac): Update to 1.18.0.

Change-Id: Ia790f180e4a8059ebf3c5275dbf5adcc444bd002
2025-05-12 08:54:40 +02:00
Ricardo Wurmus
a35e64acf9
gnu: r-mbecs: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-mbecs): Update to 1.12.0.

Change-Id: Id8af2d46dd582a403be76964033c856de49d4876
2025-05-12 08:54:40 +02:00
Ricardo Wurmus
4a4b32861c
gnu: r-diffbind: Update to 3.18.0.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.18.0.

Change-Id: Ibb77e85a8710d0744f96fa8e4719f925d904c7a4
2025-05-12 08:54:40 +02:00
Ricardo Wurmus
2087844e9e
gnu: r-greylistchip: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.40.0.
[native-inputs]: Remove r-biocstyle; add r-biocgenerics and
r-bsgenome-hsapiens-ucsc-hg19.

Change-Id: Ia7ed4eda61647f9a08b07fa98fe36a38717c4133
2025-05-12 08:54:40 +02:00
Ricardo Wurmus
32e2685d8f
gnu: r-apeglm: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.30.0.

Change-Id: I1c6483306b19df7ab3a1bd0b89a4843112fd0550
2025-05-12 08:54:40 +02:00
Ricardo Wurmus
9e559cadc7
gnu: r-apcomplex: Update to 2.74.0.
* gnu/packages/bioconductor.scm (r-apcomplex): Update to 2.74.0.

Change-Id: Ib8e15d7a188d3606abe2a03c192a7a7abfce2dfa
2025-05-12 08:54:40 +02:00
Ricardo Wurmus
05f0875ec4
gnu: r-qvalue: Update to 2.40.0.
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.40.0.

Change-Id: I230350bb75662de110543f7eb3c5b5fd09dccb90
2025-05-12 08:54:40 +02:00
Ricardo Wurmus
79e70eb1b1
gnu: r-quantsmooth: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-quantsmooth): Update to 1.74.0.

Change-Id: I7135d825e27653431584b11a6ee97625cf5bf193
2025-05-12 08:54:40 +02:00