Commit graph

7767 commits

Author SHA1 Message Date
Ricardo Wurmus
68f24ab232
gnu: r-oscope: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-oscope): Update to 1.38.0.

Change-Id: Ie63bd19aa4f96c6a75f9a523c9f6456953d84bbb
2025-05-12 08:54:34 +02:00
Ricardo Wurmus
0fb72a2f09
gnu: r-organism-dplyr: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-organism-dplyr): Update to 1.36.0.

Change-Id: I8c9511b341a095cc22510ce932e5808b89383e26
2025-05-12 08:54:34 +02:00
Ricardo Wurmus
e7a8b91be8
gnu: r-mzr: Update to 2.42.0.
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.42.0.
[native-inputs]: Remove r-codetools.

Change-Id: I7f0322706c0f78add16e1961b75f84cf5d47fcfc
2025-05-12 08:54:34 +02:00
Ricardo Wurmus
1224783dda
gnu: r-mzid: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.46.0.

Change-Id: I6780216b71c64cbb24d70ffd73794ae8e4afd842
2025-05-12 08:54:34 +02:00
Ricardo Wurmus
2ce7a6ded9
gnu: r-msnid: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.42.0.
[native-inputs]: Remove r-runit; add r-digest.

Change-Id: I8a6f5a7ca0a67251aca31c748658a0d50de03dc8
2025-05-12 08:54:33 +02:00
Ricardo Wurmus
ea35ce9f49
gnu: r-msexperiment: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-msexperiment): Update to 1.10.0.
[native-inputs]: Remove r-s4vectors, r-spectra, and r-summarizedexperiment.

Change-Id: Ie0a1fef71dae8b9dbf84e3d9bb7b7bbfb9717b11
2025-05-12 08:54:33 +02:00
Ricardo Wurmus
1f89b59863
gnu: r-msa: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-msa): Update to 1.40.0.
[native-inputs]: Add r-ape, r-pwalign, and r-seqinr.

Change-Id: I7c0e4cdba4b4588bb553ba5c588f6122bd7302be
2025-05-12 08:54:33 +02:00
Ricardo Wurmus
74f507b1ae
gnu: r-muscat: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-muscat): Update to 1.22.0.

Change-Id: I56e0e54ef73abb3f56c2f87692c3a16d27db75ad
2025-05-12 08:54:33 +02:00
Ricardo Wurmus
247002f43a
gnu: r-mosdef: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-mosdef): Update to 1.4.0.

Change-Id: Ibda20c28ef561050c07bd5a0eb381736603aac7d
2025-05-12 08:54:33 +02:00
Ricardo Wurmus
f287baeaff
gnu: r-modstrings: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-modstrings): Update to 1.24.0.

Change-Id: Id13e794acf3dabfd60495b36de498daeda03808e
2025-05-12 08:54:33 +02:00
Ricardo Wurmus
50c7c7f413
gnu: r-mmuphin: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-mmuphin): Update to 1.22.0.

Change-Id: I827e3434a8e52c3ceef6f2efe1acb958f04bdf4c
2025-05-12 08:54:33 +02:00
Ricardo Wurmus
151a17ef69
gnu: r-mfuzz: Update to 2.68.0.
* gnu/packages/bioconductor.scm (r-mfuzz): Update to 2.68.0.

Change-Id: Ic8243e125f76d552bd198b6958bc82cc8d5a4bb5
2025-05-12 08:54:33 +02:00
Ricardo Wurmus
858698e1f6
gnu: r-methylaid: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-methylaid): Update to 1.42.0.

Change-Id: Id3fc8d9aca3c002da5f6d0ed82f432799e118fa6
2025-05-12 08:54:33 +02:00
Ricardo Wurmus
1a6ca53fc8
gnu: r-metaneighbor: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-metaneighbor): Update to 1.28.0.

Change-Id: Ic7398a996cc64f1d6e504a6cdb600229e310f313
2025-05-12 08:54:32 +02:00
Ricardo Wurmus
136875cc25
gnu: r-metagenomeseq: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-metagenomeseq): Update to 1.50.0.

Change-Id: If7d3a5c53bfb6984fa74798dc42d3df497c32c59
2025-05-12 08:54:32 +02:00
Ricardo Wurmus
11426b7e1e
gnu: r-mdqc: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-mdqc): Update to 1.70.0.

Change-Id: I5b6c44ddd74e0967c97cff65cf1a6a9e3f338e44
2025-05-12 08:54:32 +02:00
Ricardo Wurmus
fc5c3998f5
gnu: r-maser: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-maser): Update to 1.26.0.
[native-inputs]: Remove r-testthat.

Change-Id: Ib65dc06db509a7861a2a8d0f160bd364b142a0bc
2025-05-12 08:54:32 +02:00
Ricardo Wurmus
4f99c28463
gnu: r-manor: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-manor): Update to 1.80.0.

Change-Id: I0c3058376db77bf73879766bcbb6a2c59f5385bf
2025-05-12 08:54:32 +02:00
Ricardo Wurmus
bb8d149a7b
gnu: r-makecdfenv: Update to 1.84.0.
* gnu/packages/bioconductor.scm (r-makecdfenv): Update to 1.84.0.
[propagated-inputs]: Remove r-zlibbioc.

Change-Id: I7cd18e09ab8a893f901e431c94fec1a8c3d961e3
2025-05-12 08:54:32 +02:00
Ricardo Wurmus
b92d4efce7
gnu: r-made4: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-made4): Update to 1.82.0.

Change-Id: I952736d83c10612977e33089bf77240630a8a3a8
2025-05-12 08:54:32 +02:00
Ricardo Wurmus
75d6489661
gnu: r-maaslin2: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.22.0.

Change-Id: I34db84198ff794b43eebfc9d64b71de7d6c4f033
2025-05-12 08:54:32 +02:00
Ricardo Wurmus
5420b4181a
gnu: r-limma: Update to 3.64.0.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.64.0.

Change-Id: Id6424a850cc96543cec37f6da902fe60a15c922d
2025-05-12 08:54:32 +02:00
Ricardo Wurmus
112712f262
gnu: r-lea: Update to 3.20.0.
* gnu/packages/bioconductor.scm (r-lea): Update to 3.20.0.

Change-Id: Ia54ac8273a3784af97a10d2ba010b8b80c1df506
2025-05-12 08:54:31 +02:00
Ricardo Wurmus
a27f5d20c4
gnu: r-keggrest: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.48.0.
[native-inputs]: Add r-biocgenerics and r-runit.

Change-Id: I52078a3bbbff6f7d0898de5dc395e99182e22e30
2025-05-12 08:54:31 +02:00
Ricardo Wurmus
8b497661d3
gnu: r-interactivedisplaybase: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.46.0.

Change-Id: Ic011f64cd3383cc14e014b6d49a70c7f588bb410
2025-05-12 08:54:31 +02:00
Ricardo Wurmus
ca48f1fdc5
gnu: r-impute: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-impute): Update to 1.82.0.

Change-Id: Ic8c461b27efcb8881886daa0fc4fc23f1464c5e3
2025-05-12 08:54:31 +02:00
Ricardo Wurmus
76e839682f
gnu: r-rpx: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-rpx): Update to 2.16.0.

Change-Id: Ib37437efc30f0c44deeaae043bfcbe165dbe3373
2025-05-12 08:54:31 +02:00
Ricardo Wurmus
7938222e6e
gnu: r-rnbeads: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-rnbeads): Update to 2.26.0.

Change-Id: Ib7f1932e42590bfe58b3b876d3673563168ebd0e
2025-05-12 08:54:31 +02:00
Ricardo Wurmus
48ef937acc
gnu: r-rhtslib: Update to 3.4.0.
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 3.4.0.

Change-Id: I02a5619bf6981f2d4e579700f0d9e06c91fcf206
2025-05-12 08:54:31 +02:00
Ricardo Wurmus
455f34b837
gnu: r-rdisop: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-rdisop): Update to 1.68.0.

Change-Id: Ia8423eea89f7d3e9473bf20905c1aab6ccc6c59e
2025-05-12 08:54:31 +02:00
Ricardo Wurmus
9a618dd6a6
gnu: r-raggedexperiment: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-raggedexperiment): Update to 1.32.0.

Change-Id: I6dc3c2e8136828dc88ce4207dfcf9b1076bc17d8
2025-05-12 08:54:31 +02:00
Ricardo Wurmus
5f758fce96
gnu: r-radiogx: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-radiogx): Update to 2.12.0.

Change-Id: I504d9c672785cb263f26fa12d340fcbb04936a2e
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
3d5454f578
gnu: r-r4rna: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-r4rna): Update to 1.36.0.

Change-Id: Ica94f5e4c6a88312631f050f8d0b2d82021f2df5
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
0c2dd8443d
gnu: r-r3cseq: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-r3cseq): Update to 1.54.0.

Change-Id: I9882221f384354fc25d948e88954af47c39fb2a5
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
973de480da
gnu: r-hpar: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.50.0.

Change-Id: I694a8fba24af5b136a3bad8dc688b69b1b012654
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
3cd007420d
gnu: r-harshlight: Update to 1.79.0.
* gnu/packages/bioconductor.scm (r-harshlight): Update to 1.79.0.

Change-Id: If3b51b8621644c5218506b45df8aa852f727cbcb
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
6bd47f0047
gnu: r-gypsum: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-gypsum): Update to 1.4.0.
[native-inputs]: Add r-dbi, r-digest, and r-rsqlite.

Change-Id: I9c47d813f75c0e3ea9f4f39ed295a1b603fc44ff
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
a4b146f1c7
gnu: r-gsva: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-gsva): Update to 2.2.0.

Change-Id: Ieab3231bded2bdc5ed7b0049deb85d8596f7eec7
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
fbc9a60461
gnu: r-gostats: Update to 2.74.0.
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.74.0.

Change-Id: Ib3fe20301d325ef58991b1af420e377d49ac5f40
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
5d7d0bcc65
gnu: r-globaltest: Update to 5.62.0.
* gnu/packages/bioconductor.scm (r-globaltest): Update to 5.62.0.

Change-Id: I9299108c1105893d7d9c535bf0e5a10f5e7321ab
2025-05-12 08:54:30 +02:00
Ricardo Wurmus
4a0ee3dc28
gnu: r-globalancova: Update to 4.26.0.
* gnu/packages/bioconductor.scm (r-globalancova): Update to 4.26.0.

Change-Id: Ibf3faf1bccd53bb05be4c8270b5ec22b3b1e3e2c
2025-05-12 08:54:29 +02:00
Ricardo Wurmus
6f1e2bdfbe
gnu: r-glad: Update to 2.72.0.
* gnu/packages/bioconductor.scm (r-glad): Update to 2.72.0.

Change-Id: I83c49e4b66f7f3e7e5d737205cf895e1c563db0d
2025-05-12 08:54:29 +02:00
Ricardo Wurmus
7508a1f82d
gnu: r-genomicfiles: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.44.0.

Change-Id: I9861b10b2c5df1bbe1b7ed332c4862b8cb082b1e
2025-05-12 08:54:29 +02:00
Ricardo Wurmus
5610a1215b
gnu: r-genomicdatacommons: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-genomicdatacommons): Update to 1.32.0.

Change-Id: I06ef3a13e65765430e6cc8fdb00eab618abf84f9
2025-05-12 08:54:29 +02:00
Ricardo Wurmus
5895283a9a
gnu: r-genomeinfodb: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.44.0.

Change-Id: If3948b1ead198467c8a211feaaa8881f43935fb2
2025-05-12 08:54:29 +02:00
Ricardo Wurmus
8f18184785
gnu: r-genefilter: Update to 1.90.0.
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.90.0.
[native-inputs]: Add r-all.

Change-Id: Idc105168d93ab5a36a2f919b8da962e1392e159d
2025-05-12 08:54:29 +02:00
Ricardo Wurmus
2394a929f7
gnu: r-gage: Update to 2.58.0.
* gnu/packages/bioconductor.scm (r-gage): Update to 2.58.0.

Change-Id: Ic44ffec8aa76aafb0e3f42e286b364d1b2dfc2b4
2025-05-12 08:54:29 +02:00
Ricardo Wurmus
026e122337
gnu: r-fastseg: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.54.0.

Change-Id: Icea08df66866a5f6599ad7c49609a2e5ada94ae6
2025-05-12 08:54:29 +02:00
Ricardo Wurmus
ad68148cc8
gnu: r-epidish: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-epidish): Update to 2.24.0.

Change-Id: I724be2ffcdca7ac249218f52216e2b0dd46c1e24
2025-05-12 08:54:29 +02:00
Ricardo Wurmus
548c747c73
gnu: r-enhancedvolcano: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-enhancedvolcano): Update to 1.26.0.

Change-Id: I3769dd7613d14eecc63d17e9ff60cd116b7bec94
2025-05-12 08:54:28 +02:00